This is the complete list of members for protocols::stepwise::sampling::general::StepWiseClustererSilentBased, including all inherited members.

auto_tune_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
calc_rms_res_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
check_for_closeness(core::pose::PoseOP const &pose_op)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
cluster()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
cluster_by_all_atom_rmsd_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
cluster_radius_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
cluster_rmsds_to_try_with_auto_tune_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
cluster_with_auto_tune()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
clustered_pose_list()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
corresponding_atom_id_map_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
do_some_clustering()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
force_align_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
get_pose_list()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
hit_score_cutoff_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
initialize_auto_tune_cluster_rmsds()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
initialize_cluster_list()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
initialize_corresponding_atom_id_map(core::pose::Pose const &pose)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
initialize_parameters_and_input()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
initialized_atom_id_map_for_rmsd_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
input_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
max_decoys_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
num_pose_in_cluster_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
output_silent_file(std::string const &silent_file)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
pose_output_list_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
recluster_current_pose_list()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
rename_tags_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
rsd_set_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
rsd_type_set_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
score_diff_cut_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
score_min_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
score_min_defined_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
set_auto_tune(bool const auto_tune)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
set_cluster_by_all_atom_rmsd(core::Real const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_cluster_radius(core::Real const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_force_align(bool const force_align)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_max_decoys(core::Size const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_rename_tags(core::Real const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_rsd_type_set(std::string const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_score_diff_cut(core::Real const &setting)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
set_silent_file_data(core::io::silent::SilentFileDataOP &sfd)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
setup_silent_struct(Size const n)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
silent_file_data()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
silent_files_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
silent_struct_output_list()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	inline
silent_struct_output_list_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
StepWiseClustererSilentBased(utility::vector1< std::string > const &silent_files_in)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(std::string const &silent_file_in)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(core::io::silent::SilentFileDataOP &sfd)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(core::io::silent::SilentFileDataOP silent_file_data, utility::vector1< Size > const &moving_res_list, protein::StepWiseProteinModelerOptionsCOP options, bool const force_align)	protocols::stepwise::sampling::general::StepWiseClustererSilentBased
tag_output_list_	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	private
~StepWiseClustererSilentBased()	protocols::stepwise::sampling::general::StepWiseClustererSilentBased	virtual