Rosetta Protocols  2014.16.56682
protocols::stepwise::sampling::general::StepWiseClustererSilentBased Member List

This is the complete list of members for protocols::stepwise::sampling::general::StepWiseClustererSilentBased, including all inherited members.

auto_tune_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
calc_rms_res_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
check_for_closeness(core::pose::PoseOP const &pose_op)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
cluster()protocols::stepwise::sampling::general::StepWiseClustererSilentBased
cluster_by_all_atom_rmsd_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
cluster_radius_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
cluster_rmsds_to_try_with_auto_tune_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
cluster_with_auto_tune()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
clustered_pose_list()protocols::stepwise::sampling::general::StepWiseClustererSilentBased
corresponding_atom_id_map_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
do_some_clustering()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
force_align_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
get_pose_list()protocols::stepwise::sampling::general::StepWiseClustererSilentBased
hit_score_cutoff_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
initialize_auto_tune_cluster_rmsds()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
initialize_cluster_list()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
initialize_corresponding_atom_id_map(core::pose::Pose const &pose)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
initialize_parameters_and_input()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
initialized_atom_id_map_for_rmsd_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
input_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
max_decoys_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
num_pose_in_cluster_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
output_silent_file(std::string const &silent_file)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
pose_output_list_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
recluster_current_pose_list()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
rename_tags_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
rsd_set_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
rsd_type_set_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
score_diff_cut_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
score_min_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
score_min_defined_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
set_auto_tune(bool const auto_tune)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
set_cluster_by_all_atom_rmsd(core::Real const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_cluster_radius(core::Real const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_force_align(bool const force_align)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_max_decoys(core::Size const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_rename_tags(core::Real const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_rsd_type_set(std::string const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_score_diff_cut(core::Real const &setting)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
set_silent_file_data(core::io::silent::SilentFileDataOP &sfd)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
setup_silent_struct(Size const n)protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
silent_file_data()protocols::stepwise::sampling::general::StepWiseClustererSilentBased
silent_files_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
silent_struct_output_list()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedinline
silent_struct_output_list_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
StepWiseClustererSilentBased(utility::vector1< std::string > const &silent_files_in)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(std::string const &silent_file_in)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(core::io::silent::SilentFileDataOP &sfd)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
StepWiseClustererSilentBased(core::io::silent::SilentFileDataOP silent_file_data, utility::vector1< Size > const &moving_res_list, protein::StepWiseProteinModelerOptionsCOP options, bool const force_align)protocols::stepwise::sampling::general::StepWiseClustererSilentBased
tag_output_list_protocols::stepwise::sampling::general::StepWiseClustererSilentBasedprivate
~StepWiseClustererSilentBased()protocols::stepwise::sampling::general::StepWiseClustererSilentBasedvirtual