| allow_insert_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| allow_variable_bond_geometry_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| apply(core::pose::Pose &pose_to_visualize) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| base_centroid_checker_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| extra_minimize_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| figure_out_actual_five_prime_chain_break_res(core::pose::Pose const &pose) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| figure_out_moving_residues(core::kinematics::MoveMap &mm, core::pose::Pose const &pose) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| Filters_map typedef | protocols::moves::Mover | |
| fixed_res_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| Freeze_sugar_torsions(core::kinematics::MoveMap &mm, Size const nres) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_default_movemap(core::pose::Pose const &pose) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| get_working_moving_res(Size const &nres) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| job_parameters_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| minimized_pose_list_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| move_map_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| native_edensity_score_checker(core::pose::Pose &pose, core::pose::Pose &native_pose) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| options_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| original_geometry_weight_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| output_empty_minimizer_silent_file() const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| output_minimized_pose_list() | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| output_parameters() | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| output_pose_wrapper(std::string const &tag, core::pose::Pose &pose, std::string const &out_silent_file) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| output_pose_wrapper(std::string &tag, char tag_first_char, core::pose::Pose &pose, core::io::silent::SilentFileData &silent_file_data, std::string const out_silent_file) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| pass_all_pose_screens(core::pose::Pose &pose, std::string const in_tag, core::io::silent::SilentFileData &silent_file_data) const | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| perform_electron_density_screen_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| Pose typedef | protocols::moves::Mover | |
| pose_list_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| pose_to_native_map_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| set_allow_insert(toolbox::AllowInsertOP setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | inline |
| set_allow_variable_bond_geometry(bool const setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | inline |
| set_base_centroid_checker(checker::RNA_BaseCentroidCheckerOP &checker) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_extra_minimize_res(utility::vector1< core::Size > setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_move_map(core::kinematics::MoveMapOP move_map_) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(StepWiseRNA_ModelerOptionsOP options) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| set_silent_file(std::string const &silent_file) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| set_user_input_VDW_bin_checker(checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | inline |
| set_vary_bond_geometry_frequency(core::Real const setting) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | inline |
| sfd_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| silent_file_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| silent_file_data() | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| StepWiseRNA_Minimizer(utility::vector1< core::pose::PoseOP > const &pose_list, StepWiseRNA_JobParametersCOP &job_parameters) | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| user_input_VDW_bin_checker_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| vary_bond_geometry_frequency_ | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseRNA_Minimizer() | protocols::stepwise::sampling::rna::StepWiseRNA_Minimizer | |
1.8.7