| ab_info_ | protocols::antibody::RefineOneCDRLoop | private |
| apply(core::pose::Pose &pose) | protocols::antibody::RefineOneCDRLoop | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| benchmark_ | protocols::antibody::RefineOneCDRLoop | private |
| cdr_loop_name_ | protocols::antibody::RefineOneCDRLoop | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::antibody::RefineOneCDRLoop | virtual |
| create() | protocols::moves::Mover | virtual |
| Filters_map typedef | protocols::moves::Mover | |
| finalize_setup(core::pose::Pose &pose) | protocols::antibody::RefineOneCDRLoop | private |
| flank_relax_ | protocols::antibody::RefineOneCDRLoop | private |
| flank_size_ | protocols::antibody::RefineOneCDRLoop | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::antibody::RefineOneCDRLoop | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| H3_filter_ | protocols::antibody::RefineOneCDRLoop | private |
| high_cst_ | protocols::antibody::RefineOneCDRLoop | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::antibody::RefineOneCDRLoop | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| num_filter_tries_ | protocols::antibody::RefineOneCDRLoop | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| pass_start_pose(core::pose::Pose &start_pose) | protocols::antibody::RefineOneCDRLoop | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| refine_mode_ | protocols::antibody::RefineOneCDRLoop | private |
| RefineOneCDRLoop() | protocols::antibody::RefineOneCDRLoop | |
| RefineOneCDRLoop(AntibodyInfoOP antibody_info) | protocols::antibody::RefineOneCDRLoop | |
| RefineOneCDRLoop(AntibodyInfoOP antibody_info, std::string refine_mode) | protocols::antibody::RefineOneCDRLoop | |
| RefineOneCDRLoop(AntibodyInfoOP antibody_info, std::string refine_mode, core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::RefineOneCDRLoop | |
| RefineOneCDRLoop(AntibodyInfoOP antibody_info, CDRNameEnum const &cdr_loop_name, std::string refine_mode, core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::RefineOneCDRLoop | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::antibody::RefineOneCDRLoop | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_default() | protocols::antibody::RefineOneCDRLoop | private |
| set_flank_relax(bool setting) | protocols::antibody::RefineOneCDRLoop | inline |
| set_flank_size(core::Size setting) | protocols::antibody::RefineOneCDRLoop | inline |
| set_h3_filter(bool setting) | protocols::antibody::RefineOneCDRLoop | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_num_filter_tries(core::Size setting) | protocols::antibody::RefineOneCDRLoop | inline |
| set_refine_mode(std::string refine_mode) | protocols::antibody::RefineOneCDRLoop | inline |
| set_score_function(core::scoring::ScoreFunctionCOP scorefxn) | protocols::antibody::RefineOneCDRLoop | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| start_pose_ | protocols::antibody::RefineOneCDRLoop | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tf_ | protocols::antibody::RefineOneCDRLoop | private |
| turn_on_benchmark() | protocols::antibody::RefineOneCDRLoop | inline |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| user_defined_ | protocols::antibody::RefineOneCDRLoop | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~RefineOneCDRLoop() | protocols::antibody::RefineOneCDRLoop | |
1.8.7