protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation Class Reference

#include <RestrictIdentitiesAtAlignedPositions.hh>

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent

Public Member Functions
	RestrictIdentitiesAtAlignedPositionsOperation ()
virtual	~RestrictIdentitiesAtAlignedPositionsOperation ()
virtual TaskOperationOP	clone () const
virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
virtual void	parse_tag (TagCOP, DataMap &)
utility::vector1< core::Size >	res_ids () const
void	res_ids (utility::vector1< core::Size > const s)
void	source_pose (std::string const s)
void	chain (core::Size const c)
core::Size	chain () const
void	design_only_target_residues (bool const b)
bool	design_only_target_residues () const
bool	prevent_repacking () const
void	prevent_repacking (bool const b)
void	keep_aas (std::string const s)
std::string	keep_aas () const
void	restrict_identities (bool const b)
bool	restrict_identities () const
Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
virtual	~RestrictOperationsBase ()

Private Attributes
core::pose::PoseOP	source_pose_
utility::vector1< core::Size >	res_ids_
core::Size	chain_
bool	design_only_target_residues_
bool	prevent_repacking_
std::string	keep_aas_
bool	restrict_identities_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef RestrictOperationsBase protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::RestrictIdentitiesAtAlignedPositionsOperation

(

)

References res_ids_, and source_pose_.

Referenced by clone().

protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::~RestrictIdentitiesAtAlignedPositionsOperation ( )

virtual

Member Function Documentation

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References core::pack::task::operation::OperateOnCertainResidues::apply(), chain(), design_only_target_residues(), protocols::toolbox::task_operations::DesignAroundOperation::design_shell(), protocols::rosetta_scripts::find_nearest_res(), keep_aas_, core::conformation::Residue::name1(), core::pack::task::operation::OperateOnCertainResidues::op(), prevent_repacking(), res_ids_, core::pose::Pose::residue(), core::pack::task::operation::OperateOnCertainResidues::residue_indices(), restrict_identities(), source_pose_, and protocols::TR.

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain ( core::Size const  c )

inline

References chain_.

core::Size protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain ( ) const

inline

References chain_.

Referenced by apply(), and parse_tag().

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::clone ( ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References RestrictIdentitiesAtAlignedPositionsOperation().

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues ( bool const  b )

inline

References protocols::match::upstream::b, and design_only_target_residues_.

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues ( ) const

inline

References design_only_target_residues_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas ( std::string const  s )

inline

References keep_aas_.

std::string protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas ( ) const

inline

References keep_aas_.

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::parse_tag ( TagCOP  tag, DataMap &    )

virtual

References chain(), design_only_target_residues(), keep_aas_, core::pose::parse_resnum(), prevent_repacking(), res_ids_, restrict_identities(), source_pose(), source_pose_, utility::string_split(), and protocols::TR.

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking ( ) const

inline

References prevent_repacking_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking ( bool const  b )

inline

References protocols::match::upstream::b, and prevent_repacking_.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids ( ) const

inline

References res_ids_.

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids ( utility::vector1< core::Size > const  s )

inline

References res_ids_.

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities ( bool const  b )

inline

References protocols::match::upstream::b, and restrict_identities_.

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities ( ) const

inline

References restrict_identities_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::source_pose

(

std::string const

s

)

References core::import_pose::pose_from_pdb(), and source_pose_.

Referenced by parse_tag().

Member Data Documentation

core::Size protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::chain_

private

Referenced by chain().

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::design_only_target_residues_

private

Referenced by design_only_target_residues().

std::string protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::keep_aas_

private

Referenced by apply(), keep_aas(), and parse_tag().

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::prevent_repacking_

private

Referenced by prevent_repacking().

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::res_ids_

private

Referenced by apply(), parse_tag(), res_ids(), and RestrictIdentitiesAtAlignedPositionsOperation().

bool protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::restrict_identities_

private

Referenced by restrict_identities().

core::pose::PoseOP protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::source_pose_

private

Referenced by apply(), parse_tag(), RestrictIdentitiesAtAlignedPositionsOperation(), and source_pose().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictIdentitiesAtAlignedPositions.hh
• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictIdentitiesAtAlignedPositions.cc