| add_equiv_atoms(std::string const &a1, std::string const &a2) | protocols::comparative_modeling::ThreadingMover | private |
| align_ | protocols::comparative_modeling::ThreadingMover | private |
| alignment() | protocols::comparative_modeling::ThreadingMover | |
| alignment(core::sequence::SequenceAlignment new_align) | protocols::comparative_modeling::ThreadingMover | |
| apply(core::pose::Pose &query_pose) | protocols::comparative_modeling::ThreadingMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| atom_equiv_ | protocols::comparative_modeling::ThreadingMover | private |
| atoms_are_equiv(std::string const &a1, std::string const &a2) | protocols::comparative_modeling::ThreadingMover | private |
| build_loops(bool setting) | protocols::comparative_modeling::ThreadingMover | |
| build_loops() const | protocols::comparative_modeling::ThreadingMover | |
| build_query_loops_ | protocols::comparative_modeling::ThreadingMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::comparative_modeling::ThreadingMover | virtual |
| create() | protocols::moves::Mover | virtual |
| Filters_map typedef | protocols::moves::Mover | |
| frag_libs() const | protocols::comparative_modeling::ThreadingMover | |
| frag_libs(utility::vector1< core::fragment::FragSetOP > new_libs) | protocols::comparative_modeling::ThreadingMover | |
| frag_libs_ | protocols::comparative_modeling::ThreadingMover | private |
| fresh_instance() const | protocols::comparative_modeling::ThreadingMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::comparative_modeling::ThreadingMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_qt_mapping(core::pose::Pose const &query_pose) const | protocols::comparative_modeling::ThreadingMover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_atom_equiv() | protocols::comparative_modeling::ThreadingMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| min_loop_size(core::Size const new_size) | protocols::comparative_modeling::ThreadingMover | |
| min_loop_size() const | protocols::comparative_modeling::ThreadingMover | |
| min_loop_size_ | protocols::comparative_modeling::ThreadingMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| query_index() const | protocols::comparative_modeling::ThreadingMover | |
| query_index(core::Size new_index) | protocols::comparative_modeling::ThreadingMover | |
| query_index_ | protocols::comparative_modeling::ThreadingMover | private |
| randomize_loop_coords(bool setting) | protocols::comparative_modeling::ThreadingMover | |
| randomize_loop_coords() | protocols::comparative_modeling::ThreadingMover | |
| randomize_loop_coords_ | protocols::comparative_modeling::ThreadingMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| repack_query(bool setting) | protocols::comparative_modeling::ThreadingMover | |
| repack_query() const | protocols::comparative_modeling::ThreadingMover | |
| repack_query_ | protocols::comparative_modeling::ThreadingMover | private |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| template_index() const | protocols::comparative_modeling::ThreadingMover | |
| template_index(core::Size new_index) | protocols::comparative_modeling::ThreadingMover | |
| template_index_ | protocols::comparative_modeling::ThreadingMover | private |
| template_pose(core::pose::Pose template_pose) | protocols::comparative_modeling::ThreadingMover | |
| template_pose_ | protocols::comparative_modeling::ThreadingMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| ThreadingMover() | protocols::comparative_modeling::ThreadingMover | |
| ThreadingMover(ThreadingMover const &object_to_copy) | protocols::comparative_modeling::ThreadingMover | |
| ThreadingMover(core::sequence::SequenceAlignment const &align, core::pose::Pose const &template_pose) | protocols::comparative_modeling::ThreadingMover | |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ThreadingMover() | protocols::comparative_modeling::ThreadingMover | inlinevirtual |
1.8.7