protocols::simple_moves::symmetry Namespace Reference

Classes
class	DetectSymmetry
class	DetectSymmetryMoverCreator
class	ExtractAsymmetricPoseMover
class	ExtractAsymmetricPoseMoverCreator
class	ExtractAsymmetricUnitMover
class	ExtractAsymmetricUnitMoverCreator
class	FaSymDockingSlideTogether
	Slides docking partners together by monitoring fa_rep. More...
class	NCSResMapping
class	OrderedSequentialSymmetrySlider
class	RandomSymmetrySlider
class	SequentialSymmetrySlider
class	SetupForSymmetryMover
class	SetupForSymmetryMoverCreator
class	SetupNCSMover
class	SetupNCSMoverCreator
class	SymDockingInitialPerturbation
class	SymDockingSlideIntoContact
	Contrary to the name, slides things apart first, then together. More...
class	SymEnergyCutRotamerTrialsMover
class	SymmetricRMSMover
class	SymmetrySlider
class	SymMinMover
class	SymMinMoverCreator
class	SymPackRotamersMover
class	SymPackRotamersMoverCreator
class	SymRotamerTrialsMover
class	SymRotamerTrialsMoverCreator
class	SymShakeStructureMover

Typedefs
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover >	SymFoldandDockRbTrialMoverOP
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover const >	SymFoldandDockRbTrialMoverCOP
typedef utility::pointer::owning_ptr < DetectSymmetryMover >	DetectSymmetryMoverOP
typedef utility::pointer::owning_ptr < DetectSymmetryMover const >	DetectSymmetryMoverCOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover >	SetupForSymmetryMoverOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover const >	SetupForSymmetryMoverCOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover >	ExtractAsymmetricUnitMoverOP
typedef utility::pointer::owning_ptr < SetupForSymmetryMover const >	ExtractAsymmetricUnitMoverCOP
typedef utility::pointer::owning_ptr < ExtractAsymmetricPoseMover >	ExtractAsymmetricPoseMoverOP
typedef utility::pointer::owning_ptr < ExtractAsymmetricPoseMover const >	ExtractAsymmetricPoseMoverCOP
typedef utility::pointer::owning_ptr < SetupNCSMover >	SetupNCSMoverOP
typedef utility::pointer::owning_ptr < SetupNCSMover const >	SetupNCSMoverCOP
typedef utility::pointer::owning_ptr < NCSResMapping >	NCSResMappingOP
typedef utility::pointer::owning_ptr < NCSResMapping const >	NCSResMappingCOP
typedef utility::pointer::owning_ptr < SymDockingInitialPerturbation >	SymDockingInitialPerturbationOP
typedef utility::pointer::owning_ptr < SymDockingInitialPerturbation const >	SymDockingInitialPerturbationCOP
typedef utility::pointer::owning_ptr < FaSymDockingSlideTogether >	FaSymDockingSlideTogetherOP
typedef utility::pointer::owning_ptr < FaSymDockingSlideTogether const >	FaSymDockingSlideTogetherCOP
typedef utility::pointer::owning_ptr < SymmetrySlider >	SymmetrySliderOP
typedef utility::pointer::owning_ptr < SymmetrySlider const >	SymmetrySliderCOP
typedef utility::pointer::owning_ptr < SequentialSymmetrySlider >	SequentialSymmetrySliderOP
typedef utility::pointer::owning_ptr < SequentialSymmetrySlider const >	SequentialSymmetrySliderCOP
typedef utility::pointer::owning_ptr < OrderedSequentialSymmetrySlider >	OrderedSequentialSymmetrySliderOP
typedef utility::pointer::owning_ptr < OrderedSequentialSymmetrySlider const >	OrderedSequentialSymmetrySliderCOP
typedef utility::pointer::owning_ptr < RandomSymmetrySlider >	RandomSymmetrySliderOP
typedef utility::pointer::owning_ptr < RandomSymmetrySlider const >	RandomSymmetrySliderCOP
typedef utility::pointer::owning_ptr < SymmetricRMSMover >	SymmetricRMSMoverOP
typedef utility::pointer::owning_ptr < SymmetricRMSMover const >	SymmetricRMSMoverCOP
typedef utility::pointer::owning_ptr < SymMinMover >	SymMinMoverOP
typedef utility::pointer::owning_ptr < SymMinMover const >	SymMinMoverCOP
typedef utility::pointer::owning_ptr < SymPackRotamersMover >	SymPackRotamersMoverOP
typedef utility::pointer::owning_ptr < SymPackRotamersMover const >	SymPackRotamersMoverCOP
typedef utility::pointer::owning_ptr < SymRotamerTrialsMover >	SymRotamerTrialsMoverOP
typedef utility::pointer::owning_ptr < SymRotamerTrialsMover const >	SymRotamerTrialsMoverCOP
typedef utility::pointer::owning_ptr < SymEnergyCutRotamerTrialsMover >	SymEnergyCutRotamerTrialsMoverOP
typedef utility::pointer::owning_ptr < SymEnergyCutRotamerTrialsMover const >	SymEnergyCutRotamerTrialsMoverCOP
typedef utility::pointer::owning_ptr < SymShakeStructureMover >	SymShakeStructureMoverOP
typedef utility::pointer::owning_ptr < SymShakeStructureMover const >	SymShakeStructureMoverCOP

Variables
static basic::Tracer	TR ("protocols.simple_moves.symmetry.DetectSymmetry")
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SetupForSymmetryMover")
static basic::Tracer	TZ ("protocols.simple_moves.symmetry.SetupNCSMover")
static numeric::random::RandomGenerator	RG (4227034)
static basic::Tracer	TR ("protocols.simple_moves.symmetry.SymmetricRMSMover")

Typedef Documentation

typedef utility::pointer::owning_ptr< DetectSymmetryMover const > protocols::simple_moves::symmetry::DetectSymmetryMoverCOP

typedef utility::pointer::owning_ptr< DetectSymmetryMover > protocols::simple_moves::symmetry::DetectSymmetryMoverOP

typedef utility::pointer::owning_ptr< ExtractAsymmetricPoseMover const > protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverCOP

typedef utility::pointer::owning_ptr< ExtractAsymmetricPoseMover > protocols::simple_moves::symmetry::ExtractAsymmetricPoseMoverOP

typedef utility::pointer::owning_ptr< SetupForSymmetryMover const > protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverCOP

typedef utility::pointer::owning_ptr< SetupForSymmetryMover > protocols::simple_moves::symmetry::ExtractAsymmetricUnitMoverOP

typedef utility::pointer::owning_ptr< FaSymDockingSlideTogether const > protocols::simple_moves::symmetry::FaSymDockingSlideTogetherCOP

typedef utility::pointer::owning_ptr< FaSymDockingSlideTogether > protocols::simple_moves::symmetry::FaSymDockingSlideTogetherOP

typedef utility::pointer::owning_ptr< NCSResMapping const > protocols::simple_moves::symmetry::NCSResMappingCOP

typedef utility::pointer::owning_ptr< NCSResMapping > protocols::simple_moves::symmetry::NCSResMappingOP

typedef utility::pointer::owning_ptr< OrderedSequentialSymmetrySlider const > protocols::simple_moves::symmetry::OrderedSequentialSymmetrySliderCOP

typedef utility::pointer::owning_ptr< OrderedSequentialSymmetrySlider > protocols::simple_moves::symmetry::OrderedSequentialSymmetrySliderOP

typedef utility::pointer::owning_ptr< RandomSymmetrySlider const > protocols::simple_moves::symmetry::RandomSymmetrySliderCOP

typedef utility::pointer::owning_ptr< RandomSymmetrySlider > protocols::simple_moves::symmetry::RandomSymmetrySliderOP

typedef utility::pointer::owning_ptr< SequentialSymmetrySlider const > protocols::simple_moves::symmetry::SequentialSymmetrySliderCOP

typedef utility::pointer::owning_ptr< SequentialSymmetrySlider > protocols::simple_moves::symmetry::SequentialSymmetrySliderOP

typedef utility::pointer::owning_ptr< SetupForSymmetryMover const > protocols::simple_moves::symmetry::SetupForSymmetryMoverCOP

typedef utility::pointer::owning_ptr< SetupForSymmetryMover > protocols::simple_moves::symmetry::SetupForSymmetryMoverOP

typedef utility::pointer::owning_ptr< SetupNCSMover const > protocols::simple_moves::symmetry::SetupNCSMoverCOP

typedef utility::pointer::owning_ptr< SetupNCSMover > protocols::simple_moves::symmetry::SetupNCSMoverOP

typedef utility::pointer::owning_ptr< SymDockingInitialPerturbation const > protocols::simple_moves::symmetry::SymDockingInitialPerturbationCOP

typedef utility::pointer::owning_ptr< SymDockingInitialPerturbation > protocols::simple_moves::symmetry::SymDockingInitialPerturbationOP

typedef utility::pointer::owning_ptr< SymEnergyCutRotamerTrialsMover const > protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMoverCOP

typedef utility::pointer::owning_ptr< SymEnergyCutRotamerTrialsMover > protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMoverOP

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover const > protocols::simple_moves::symmetry::SymFoldandDockRbTrialMoverCOP

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover > protocols::simple_moves::symmetry::SymFoldandDockRbTrialMoverOP

typedef utility::pointer::owning_ptr< SymmetricRMSMover const > protocols::simple_moves::symmetry::SymmetricRMSMoverCOP

typedef utility::pointer::owning_ptr< SymmetricRMSMover > protocols::simple_moves::symmetry::SymmetricRMSMoverOP

typedef utility::pointer::owning_ptr< SymmetrySlider const > protocols::simple_moves::symmetry::SymmetrySliderCOP

typedef utility::pointer::owning_ptr< SymmetrySlider > protocols::simple_moves::symmetry::SymmetrySliderOP

typedef utility::pointer::owning_ptr< SymMinMover const > protocols::simple_moves::symmetry::SymMinMoverCOP

typedef utility::pointer::owning_ptr< SymMinMover > protocols::simple_moves::symmetry::SymMinMoverOP

typedef utility::pointer::owning_ptr< SymPackRotamersMover const > protocols::simple_moves::symmetry::SymPackRotamersMoverCOP

typedef utility::pointer::owning_ptr< SymPackRotamersMover > protocols::simple_moves::symmetry::SymPackRotamersMoverOP

typedef utility::pointer::owning_ptr< SymRotamerTrialsMover const > protocols::simple_moves::symmetry::SymRotamerTrialsMoverCOP

typedef utility::pointer::owning_ptr< SymRotamerTrialsMover > protocols::simple_moves::symmetry::SymRotamerTrialsMoverOP

typedef utility::pointer::owning_ptr< SymShakeStructureMover const > protocols::simple_moves::symmetry::SymShakeStructureMoverCOP

typedef utility::pointer::owning_ptr< SymShakeStructureMover > protocols::simple_moves::symmetry::SymShakeStructureMoverOP

Variable Documentation

numeric::random::RandomGenerator protocols::simple_moves::symmetry::RG(4227034)

static

Referenced by protocols::simple_moves::symmetry::SequentialSymmetrySlider::init(), and protocols::simple_moves::symmetry::RandomSymmetrySlider::select_jump().

basic::Tracer protocols::simple_moves::symmetry::TR("protocols.simple_moves.symmetry.SymmetricRMSMover")

static

basic::Tracer protocols::simple_moves::symmetry::TR("protocols.simple_moves.symmetry.DetectSymmetry")

static

Referenced by protocols::simple_moves::symmetry::DetectSymmetry::apply(), protocols::simple_moves::symmetry::SymDockingInitialPerturbation::apply(), protocols::simple_moves::symmetry::SymDockingSlideIntoContact::apply(), protocols::simple_moves::symmetry::SymmetrySlider::continue_slide(), protocols::simple_moves::symmetry::SequentialSymmetrySlider::select_jump(), protocols::simple_moves::symmetry::SymmetrySlider::set_current_jump(), protocols::simple_moves::symmetry::SymmetrySlider::setup(), protocols::simple_moves::symmetry::SymmetrySlider::slide(), protocols::simple_moves::symmetry::SymmetrySlider::slide_away(), and protocols::simple_moves::symmetry::SymmetrySlider::very_far_away().

basic::Tracer protocols::simple_moves::symmetry::TR("protocols.simple_moves.symmetry.SetupForSymmetryMover")

static

basic::Tracer protocols::simple_moves::symmetry::TZ("protocols.simple_moves.symmetry.SetupNCSMover")

static

Referenced by protocols::simple_moves::symmetry::SetupNCSMover::apply(), and protocols::simple_moves::symmetry::SetupNCSMover::parse_my_tag().