protocols::stepwise::screener Namespace Reference

Classes
class	AnchorSugarScreener
class	AtrRepScreener
class	BaseBinMapUpdater
class	BaseCentroidScreener
class	BulgeApplier
class	CentroidDistanceScreener
class	ChainClosableGeometryResidueBasedScreener
class	ChainClosableGeometryScreener
class	ChainClosableGeometryStubBasedScreener
class	ChainClosureScreener
class	FastForwardToNextResidueAlternative
class	FastForwardToNextRigidBody
class	IntegrationTestBreaker
class	NativeRMSD_Screener
class	O2PrimeScreener
class	PhosphateScreener
class	PoseSelectionScreener
class	ProteinAtrRepScreener
class	ProteinPackScreener
class	ResidueContactScreener
class	SampleApplier
class	SimplePoseSelection
class	SimpleRMSD_Screener
class	StepWiseResiduePairScreener
class	StepWiseScreener
class	StubApplier
class	StubDistanceScreener
class	SugarInstantiator
class	TagDefinition
class	VDW_BinScreener

Typedefs
typedef utility::pointer::owning_ptr < AnchorSugarScreener >	AnchorSugarScreenerOP
typedef utility::pointer::owning_ptr < AnchorSugarScreener const >	AnchorSugarScreenerCOP
typedef utility::pointer::owning_ptr < AtrRepScreener >	AtrRepScreenerOP
typedef utility::pointer::owning_ptr < AtrRepScreener const >	AtrRepScreenerCOP
typedef utility::pointer::owning_ptr < BaseBinMapUpdater >	BaseBinMapUpdaterOP
typedef utility::pointer::owning_ptr < BaseBinMapUpdater const >	BaseBinMapUpdaterCOP
typedef utility::pointer::owning_ptr < BaseCentroidScreener >	BaseCentroidScreenerOP
typedef utility::pointer::owning_ptr < BaseCentroidScreener const >	BaseCentroidScreenerCOP
typedef utility::pointer::owning_ptr < BulgeApplier >	BulgeApplierOP
typedef utility::pointer::owning_ptr < BulgeApplier const >	BulgeApplierCOP
typedef utility::pointer::owning_ptr < CentroidDistanceScreener >	CentroidDistanceScreenerOP
typedef utility::pointer::owning_ptr < CentroidDistanceScreener const >	CentroidDistanceScreenerCOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryResidueBasedScreener >	ChainClosableGeometryResidueBasedScreenerOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryResidueBasedScreener const >	ChainClosableGeometryResidueBasedScreenerCOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryScreener >	ChainClosableGeometryScreenerOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryScreener const >	ChainClosableGeometryScreenerCOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryStubBasedScreener >	ChainClosableGeometryStubBasedScreenerOP
typedef utility::pointer::owning_ptr < ChainClosableGeometryStubBasedScreener const >	ChainClosableGeometryStubBasedScreenerCOP
typedef utility::pointer::owning_ptr < ChainClosureScreener >	ChainClosureScreenerOP
typedef utility::pointer::owning_ptr < ChainClosureScreener const >	ChainClosureScreenerCOP
typedef utility::pointer::owning_ptr < FastForwardToNextResidueAlternative >	FastForwardToNextResidueAlternativeOP
typedef utility::pointer::owning_ptr < FastForwardToNextResidueAlternative const >	FastForwardToNextResidueAlternativeCOP
typedef utility::pointer::owning_ptr < FastForwardToNextRigidBody >	FastForwardToNextRigidBodyOP
typedef utility::pointer::owning_ptr < FastForwardToNextRigidBody const >	FastForwardToNextRigidBodyCOP
typedef utility::pointer::owning_ptr < IntegrationTestBreaker >	IntegrationTestBreakerOP
typedef utility::pointer::owning_ptr < IntegrationTestBreaker const >	IntegrationTestBreakerCOP
typedef utility::pointer::owning_ptr < NativeRMSD_Screener >	NativeRMSD_ScreenerOP
typedef utility::pointer::owning_ptr < NativeRMSD_Screener const >	NativeRMSD_ScreenerCOP
typedef utility::pointer::owning_ptr < O2PrimeScreener >	O2PrimeScreenerOP
typedef utility::pointer::owning_ptr < O2PrimeScreener const >	O2PrimeScreenerCOP
typedef utility::pointer::owning_ptr < PhosphateScreener >	PhosphateScreenerOP
typedef utility::pointer::owning_ptr < PhosphateScreener const >	PhosphateScreenerCOP
typedef utility::pointer::owning_ptr < PoseSelectionScreener >	PoseSelectionScreenerOP
typedef utility::pointer::owning_ptr < PoseSelectionScreener const >	PoseSelectionScreenerCOP
typedef utility::pointer::owning_ptr < ProteinAtrRepScreener >	ProteinAtrRepScreenerOP
typedef utility::pointer::owning_ptr < ProteinAtrRepScreener const >	ProteinAtrRepScreenerCOP
typedef utility::pointer::owning_ptr < ProteinPackScreener >	ProteinPackScreenerOP
typedef utility::pointer::owning_ptr < ProteinPackScreener const >	ProteinPackScreenerCOP
typedef utility::pointer::owning_ptr < ResidueContactScreener >	ResidueContactScreenerOP
typedef utility::pointer::owning_ptr < ResidueContactScreener const >	ResidueContactScreenerCOP
typedef utility::pointer::owning_ptr < SampleApplier >	SampleApplierOP
typedef utility::pointer::owning_ptr < SampleApplier const >	SampleApplierCOP
typedef utility::pointer::owning_ptr < SimplePoseSelection >	SimplePoseSelectionOP
typedef utility::pointer::owning_ptr < SimplePoseSelection const >	SimplePoseSelectionCOP
typedef utility::pointer::owning_ptr < SimpleRMSD_Screener >	SimpleRMSD_ScreenerOP
typedef utility::pointer::owning_ptr < SimpleRMSD_Screener const >	SimpleRMSD_ScreenerCOP
typedef utility::pointer::owning_ptr < StepWiseResiduePairScreener >	StepWiseResiduePairScreenerOP
typedef utility::pointer::owning_ptr < StepWiseResiduePairScreener const >	StepWiseResiduePairScreenerCOP
typedef utility::pointer::owning_ptr < StepWiseScreener >	StepWiseScreenerOP
typedef utility::pointer::owning_ptr < StepWiseScreener const >	StepWiseScreenerCOP
typedef utility::pointer::owning_ptr < StepWiseScreenerUtil >	StepWiseScreenerUtilOP
typedef utility::pointer::owning_ptr < StepWiseScreenerUtil const >	StepWiseScreenerUtilCOP
typedef utility::pointer::owning_ptr < StubApplier >	StubApplierOP
typedef utility::pointer::owning_ptr < StubApplier const >	StubApplierCOP
typedef utility::pointer::owning_ptr < StubDistanceScreener >	StubDistanceScreenerOP
typedef utility::pointer::owning_ptr < StubDistanceScreener const >	StubDistanceScreenerCOP
typedef utility::pointer::owning_ptr < SugarInstantiator >	SugarInstantiatorOP
typedef utility::pointer::owning_ptr < SugarInstantiator const >	SugarInstantiatorCOP
typedef utility::pointer::owning_ptr < TagDefinition >	TagDefinitionOP
typedef utility::pointer::owning_ptr < TagDefinition const >	TagDefinitionCOP
typedef utility::pointer::owning_ptr < VDW_BinScreener >	VDW_BinScreenerOP
typedef utility::pointer::owning_ptr < VDW_BinScreener const >	VDW_BinScreenerCOP

Enumerations
enum	StepWiseScreenerType {   NONE, ANCHOR_SUGAR, ATR_REP, BASE_BIN_MAP,   BASE_CENTROID, BULGE_APPLIER, CENTROID_DISTANCE, CHAIN_CLOSURE,   CHAIN_CLOSABLE_GEOMETRY, CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED, CHAIN_CLOSABLE_GEOMETRY_STUB_BASED, FAST_FORWARD_TO_NEXT_RIGID_BODY,   FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE, INTEGRATION_TEST, NATIVE_RMSD, O2PRIME_PACK,   PHOSPHATE_PACK, POSE_SELECTION, PROTEIN_ATR_REP, PROTEIN_PACK,   RESIDUE_APPLIER, RESIDUE_CONTACT, SAMPLE_APPLIER, SAMPLE_APPLIER_WITH_RESIDUE_LIST,   SIMPLE_POSE_SELECTION, SIMPLE_RMSD, STUB_APPLIER, STUB_DISTANCE,   SUGAR_INSTANTIATOR, TAG_DEFINITION, VDW_ATR_REP, VDW_BIN }

Functions
static pose::Pose *	blank_pose ()
void	fast_forward_to_next_residue_pair (rotamer_sampler::RotamerBaseOP sampler, Size const res1, Size const res2)

Typedef Documentation

typedef utility::pointer::owning_ptr< AnchorSugarScreener const > protocols::stepwise::screener::AnchorSugarScreenerCOP

typedef utility::pointer::owning_ptr< AnchorSugarScreener > protocols::stepwise::screener::AnchorSugarScreenerOP

typedef utility::pointer::owning_ptr< AtrRepScreener const > protocols::stepwise::screener::AtrRepScreenerCOP

typedef utility::pointer::owning_ptr< AtrRepScreener > protocols::stepwise::screener::AtrRepScreenerOP

typedef utility::pointer::owning_ptr< BaseBinMapUpdater const > protocols::stepwise::screener::BaseBinMapUpdaterCOP

typedef utility::pointer::owning_ptr< BaseBinMapUpdater > protocols::stepwise::screener::BaseBinMapUpdaterOP

typedef utility::pointer::owning_ptr< BaseCentroidScreener const > protocols::stepwise::screener::BaseCentroidScreenerCOP

typedef utility::pointer::owning_ptr< BaseCentroidScreener > protocols::stepwise::screener::BaseCentroidScreenerOP

typedef utility::pointer::owning_ptr< BulgeApplier const > protocols::stepwise::screener::BulgeApplierCOP

typedef utility::pointer::owning_ptr< BulgeApplier > protocols::stepwise::screener::BulgeApplierOP

typedef utility::pointer::owning_ptr< CentroidDistanceScreener const > protocols::stepwise::screener::CentroidDistanceScreenerCOP

typedef utility::pointer::owning_ptr< CentroidDistanceScreener > protocols::stepwise::screener::CentroidDistanceScreenerOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryResidueBasedScreener const > protocols::stepwise::screener::ChainClosableGeometryResidueBasedScreenerCOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryResidueBasedScreener > protocols::stepwise::screener::ChainClosableGeometryResidueBasedScreenerOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryScreener const > protocols::stepwise::screener::ChainClosableGeometryScreenerCOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryScreener > protocols::stepwise::screener::ChainClosableGeometryScreenerOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryStubBasedScreener const > protocols::stepwise::screener::ChainClosableGeometryStubBasedScreenerCOP

typedef utility::pointer::owning_ptr< ChainClosableGeometryStubBasedScreener > protocols::stepwise::screener::ChainClosableGeometryStubBasedScreenerOP

typedef utility::pointer::owning_ptr< ChainClosureScreener const > protocols::stepwise::screener::ChainClosureScreenerCOP

typedef utility::pointer::owning_ptr< ChainClosureScreener > protocols::stepwise::screener::ChainClosureScreenerOP

typedef utility::pointer::owning_ptr< FastForwardToNextResidueAlternative const > protocols::stepwise::screener::FastForwardToNextResidueAlternativeCOP

typedef utility::pointer::owning_ptr< FastForwardToNextResidueAlternative > protocols::stepwise::screener::FastForwardToNextResidueAlternativeOP

typedef utility::pointer::owning_ptr< FastForwardToNextRigidBody const > protocols::stepwise::screener::FastForwardToNextRigidBodyCOP

typedef utility::pointer::owning_ptr< FastForwardToNextRigidBody > protocols::stepwise::screener::FastForwardToNextRigidBodyOP

typedef utility::pointer::owning_ptr< IntegrationTestBreaker const > protocols::stepwise::screener::IntegrationTestBreakerCOP

typedef utility::pointer::owning_ptr< IntegrationTestBreaker > protocols::stepwise::screener::IntegrationTestBreakerOP

typedef utility::pointer::owning_ptr< NativeRMSD_Screener const > protocols::stepwise::screener::NativeRMSD_ScreenerCOP

typedef utility::pointer::owning_ptr< NativeRMSD_Screener > protocols::stepwise::screener::NativeRMSD_ScreenerOP

typedef utility::pointer::owning_ptr< O2PrimeScreener const > protocols::stepwise::screener::O2PrimeScreenerCOP

typedef utility::pointer::owning_ptr< O2PrimeScreener > protocols::stepwise::screener::O2PrimeScreenerOP

typedef utility::pointer::owning_ptr< PhosphateScreener const > protocols::stepwise::screener::PhosphateScreenerCOP

typedef utility::pointer::owning_ptr< PhosphateScreener > protocols::stepwise::screener::PhosphateScreenerOP

typedef utility::pointer::owning_ptr< PoseSelectionScreener const > protocols::stepwise::screener::PoseSelectionScreenerCOP

typedef utility::pointer::owning_ptr< PoseSelectionScreener > protocols::stepwise::screener::PoseSelectionScreenerOP

typedef utility::pointer::owning_ptr< ProteinAtrRepScreener const > protocols::stepwise::screener::ProteinAtrRepScreenerCOP

typedef utility::pointer::owning_ptr< ProteinAtrRepScreener > protocols::stepwise::screener::ProteinAtrRepScreenerOP

typedef utility::pointer::owning_ptr< ProteinPackScreener const > protocols::stepwise::screener::ProteinPackScreenerCOP

typedef utility::pointer::owning_ptr< ProteinPackScreener > protocols::stepwise::screener::ProteinPackScreenerOP

typedef utility::pointer::owning_ptr< ResidueContactScreener const > protocols::stepwise::screener::ResidueContactScreenerCOP

typedef utility::pointer::owning_ptr< ResidueContactScreener > protocols::stepwise::screener::ResidueContactScreenerOP

typedef utility::pointer::owning_ptr< SampleApplier const > protocols::stepwise::screener::SampleApplierCOP

typedef utility::pointer::owning_ptr< SampleApplier > protocols::stepwise::screener::SampleApplierOP

typedef utility::pointer::owning_ptr< SimplePoseSelection const > protocols::stepwise::screener::SimplePoseSelectionCOP

typedef utility::pointer::owning_ptr< SimplePoseSelection > protocols::stepwise::screener::SimplePoseSelectionOP

typedef utility::pointer::owning_ptr< SimpleRMSD_Screener const > protocols::stepwise::screener::SimpleRMSD_ScreenerCOP

typedef utility::pointer::owning_ptr< SimpleRMSD_Screener > protocols::stepwise::screener::SimpleRMSD_ScreenerOP

typedef utility::pointer::owning_ptr< StepWiseResiduePairScreener const > protocols::stepwise::screener::StepWiseResiduePairScreenerCOP

typedef utility::pointer::owning_ptr< StepWiseResiduePairScreener > protocols::stepwise::screener::StepWiseResiduePairScreenerOP

typedef utility::pointer::owning_ptr< StepWiseScreener const > protocols::stepwise::screener::StepWiseScreenerCOP

typedef utility::pointer::owning_ptr< StepWiseScreener > protocols::stepwise::screener::StepWiseScreenerOP

typedef utility::pointer::owning_ptr< StepWiseScreenerUtil const > protocols::stepwise::screener::StepWiseScreenerUtilCOP

typedef utility::pointer::owning_ptr< StepWiseScreenerUtil > protocols::stepwise::screener::StepWiseScreenerUtilOP

typedef utility::pointer::owning_ptr< StubApplier const > protocols::stepwise::screener::StubApplierCOP

typedef utility::pointer::owning_ptr< StubApplier > protocols::stepwise::screener::StubApplierOP

typedef utility::pointer::owning_ptr< StubDistanceScreener const > protocols::stepwise::screener::StubDistanceScreenerCOP

typedef utility::pointer::owning_ptr< StubDistanceScreener > protocols::stepwise::screener::StubDistanceScreenerOP

typedef utility::pointer::owning_ptr< SugarInstantiator const > protocols::stepwise::screener::SugarInstantiatorCOP

typedef utility::pointer::owning_ptr< SugarInstantiator > protocols::stepwise::screener::SugarInstantiatorOP

typedef utility::pointer::owning_ptr< TagDefinition const > protocols::stepwise::screener::TagDefinitionCOP

typedef utility::pointer::owning_ptr< TagDefinition > protocols::stepwise::screener::TagDefinitionOP

typedef utility::pointer::owning_ptr< VDW_BinScreener const > protocols::stepwise::screener::VDW_BinScreenerCOP

typedef utility::pointer::owning_ptr< VDW_BinScreener > protocols::stepwise::screener::VDW_BinScreenerOP

Enumeration Type Documentation

enum protocols::stepwise::screener::StepWiseScreenerType

Enumerator
NONE
ANCHOR_SUGAR
ATR_REP
BASE_BIN_MAP
BASE_CENTROID
BULGE_APPLIER
CENTROID_DISTANCE
CHAIN_CLOSURE
CHAIN_CLOSABLE_GEOMETRY
CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED
CHAIN_CLOSABLE_GEOMETRY_STUB_BASED
FAST_FORWARD_TO_NEXT_RIGID_BODY
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
INTEGRATION_TEST
NATIVE_RMSD
O2PRIME_PACK
PHOSPHATE_PACK
POSE_SELECTION
PROTEIN_ATR_REP
PROTEIN_PACK
RESIDUE_APPLIER
RESIDUE_CONTACT
SAMPLE_APPLIER
SAMPLE_APPLIER_WITH_RESIDUE_LIST
SIMPLE_POSE_SELECTION
SIMPLE_RMSD
STUB_APPLIER
STUB_DISTANCE
SUGAR_INSTANTIATOR
TAG_DEFINITION
VDW_ATR_REP
VDW_BIN

Function Documentation

static pose::Pose* protocols::stepwise::screener::blank_pose ( )

static

void protocols::stepwise::screener::fast_forward_to_next_residue_pair	(	rotamer_sampler::RotamerBaseOP	sampler,
		Size const	res1,
		Size const	res2
	)

References utility::pointer::owning_ptr< T >::get(), protocols::rotamer_sampler::RIGID_BODY_WITH_RESIDUE_ALTERNATIVES, and protocols::rotamer_sampler::RIGID_BODY_WITH_RESIDUE_LIST.

Referenced by protocols::stepwise::screener::StepWiseResiduePairScreener::fast_forward(), and protocols::stepwise::screener::ChainClosureScreener::fast_forward().