protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation Class Reference

#include <RestrictToAlignedSegments.hh>

Public Types
typedef protocols::toolbox::task_operations::RestrictOperationsBase	parent
Public Types inherited from protocols::toolbox::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent

Public Member Functions
	RestrictToAlignedSegmentsOperation ()
virtual	~RestrictToAlignedSegmentsOperation ()
virtual core::pack::task::operation::TaskOperationOP	clone () const
virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
virtual void	parse_tag (TagCOP, DataMap &)
utility::vector1< core::Size >	start_res () const
void	start_res (utility::vector1< core::Size > const s)
utility::vector1< core::Size >	stop_res () const
void	stop_res (utility::vector1< core::Size > const s)
core::Size	chain () const
void	chain (core::Size const c)
core::Real	repack_shell () const
void	repack_shell (core::Real const r)
Public Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
virtual	~RestrictOperationsBase ()

Private Attributes
utility::vector1 < core::pose::PoseOP >	source_pose_
utility::vector1< core::Size >	start_res_
utility::vector1< core::Size >	stop_res_
core::Size	chain_
core::Real	repack_shell_

Additional Inherited Members
Protected Member Functions inherited from protocols::toolbox::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

typedef protocols::toolbox::task_operations::RestrictOperationsBase protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::RestrictToAlignedSegmentsOperation

(

)

protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::~RestrictToAlignedSegmentsOperation ( )

virtual

Member Function Documentation

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

References core::pack::task::operation::OperateOnCertainResidues::apply(), chain, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::rosetta_scripts::find_nearest_res(), core::pack::task::operation::OperateOnCertainResidues::op(), core::pack::task::TaskFactory::push_back(), core::pack::task::operation::OperateOnCertainResidues::residue_indices(), protocols::rosetta_scripts::residue_packer_states(), and protocols::TR.

core::Size protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain ( ) const

inline

References chain_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain ( core::Size const  c )

inline

References chain_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::clone ( ) const

virtual

Implements protocols::toolbox::task_operations::RestrictOperationsBase.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::parse_tag ( TagCOP  tag, DataMap &    )

virtual

References chain, core::pose::parse_resnum(), core::import_pose::pose_from_pdb(), and runtime_assert.

core::Real protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( ) const

inline

References repack_shell_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( core::Real const  r )

inline

References repack_shell_.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res ( ) const

inline

References start_res_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res ( utility::vector1< core::Size > const  s )

inline

References start_res_.

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( ) const

inline

References stop_res_.

void protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( utility::vector1< core::Size > const  s )

inline

References stop_res_.

Member Data Documentation

core::Size protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::chain_

private

Referenced by chain().

core::Real protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::repack_shell_

private

Referenced by repack_shell().

utility::vector1< core::pose::PoseOP > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::source_pose_

private

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::start_res_

private

Referenced by start_res().

utility::vector1< core::Size > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::stop_res_

private

Referenced by stop_res().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictToAlignedSegments.hh
• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictToAlignedSegments.cc