StepWiseRNA_PoseSetupFromCommandLine.hh File Reference

#include <protocols/stepwise/sampling/rna/StepWiseRNA_JobParameters.fwd.hh>
#include <protocols/stepwise/sampling/rna/legacy/StepWiseRNA_PoseSetup.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna
	protocols::stepwise::sampling::rna::legacy

Functions
void	protocols::stepwise::sampling::rna::legacy::apply_chi_cst (core::pose::Pose &pose, core::pose::Pose const &ref_pose)
std::string	protocols::stepwise::sampling::rna::legacy::get_working_directory ()
utility::vector1< core::Size >	protocols::stepwise::sampling::rna::legacy::get_fixed_res (core::Size const nres)
bool	protocols::stepwise::sampling::rna::legacy::is_nonempty_input_silent_file (std::string const input_silent_file, std::string const exit_key_string)
utility::vector1< core::Size >	protocols::stepwise::sampling::rna::legacy::get_input_res (core::Size const nres, std::string const pose_num)
utility::vector1< std::string >	protocols::stepwise::sampling::rna::legacy::get_silent_file_tags ()
core::scoring::ScoreFunctionOP	protocols::stepwise::sampling::rna::legacy::create_scorefxn ()
StepWiseRNA_JobParametersOP	protocols::stepwise::sampling::rna::legacy::setup_simple_full_length_rna_job_parameters ()
StepWiseRNA_JobParametersOP	protocols::stepwise::sampling::rna::legacy::setup_rna_job_parameters (bool check_for_previously_closed_cutpoint_with_input_pose)
void	protocols::stepwise::sampling::rna::legacy::setup_copy_DOF_input (StepWiseRNA_PoseSetupOP &stepwise_rna_pose_setup)
StepWiseRNA_PoseSetupOP	protocols::stepwise::sampling::rna::legacy::setup_pose_setup_class (StepWiseRNA_JobParametersOP &job_parameters, bool const copy_DOF)
void	protocols::stepwise::sampling::rna::legacy::check_if_silent_file_exists ()
bool	protocols::stepwise::sampling::rna::legacy::get_tag_and_silent_file_for_struct (std::string &swa_silent_file, std::string &out_tag, Size const &n, bool const &multiple_shots, std::string const &silent_file)
void	protocols::stepwise::sampling::rna::legacy::ensure_directory_for_out_silent_file_exists ()

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu