protocols::environment::claims::JumpClaim Class Reference

#include <JumpClaim.hh>

Public Member Functions
	JumpClaim (ClaimingMoverOP owner, std::string const &label, LocalPosition const &jpos1, LocalPosition const &jpos2, LocalPosition const &cutp=LocalPosition("", 0))
virtual void	yield_elements (core::environment::FoldTreeSketch const &fts, JumpElements &elements) const
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
virtual void	yield_elements (core::environment::FoldTreeSketch const &fts, RTElements &elements) const
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
virtual void	yield_elements (core::environment::FoldTreeSketch const &fts, CutElements &elements) const
	build ResidueElements that indicate the introduction of a new peptide edge into the fold tree. More...
void	set_atoms (std::string const &a1, std::string const &a2)
void	ctrl_strength (ControlStrength const &str)
void	init_strength (InitializationStrength const &str)
bool	physical () const
void	physical (bool setting)
std::string const &	label () const
LocalPosition const &	pos1 () const
LocalPosition const &	pos2 () const
std::string const &	atom1 () const
std::string const &	atom2 () const
virtual EnvClaimOP	clone () const
virtual std::string	str_type () const
virtual void	show (std::ostream &os) const
Public Member Functions inherited from protocols::environment::claims::EnvClaim
virtual	~EnvClaim ()
	Virtual destructor for reasons mysteirous. More...
	EnvClaim (ClaimingMoverOP)
ClaimingMoverOP	owner () const

Protected Member Functions
LocalPosition const &	cut_position () const

Private Types
typedef EnvClaim	Parent
typedef core::environment::LocalPosition	LocalPosition

Private Attributes
std::string	label_
LocalPosition	pos1_
LocalPosition	pos2_
LocalPosition	cut_
std::string	atom1_
std::string	atom2_
bool	physical_cut_
ControlStrength	c_str_
InitializationStrength	i_str_

Member Typedef Documentation

typedef core::environment::LocalPosition protocols::environment::claims::JumpClaim::LocalPosition

private

typedef EnvClaim protocols::environment::claims::JumpClaim::Parent

private

Constructor & Destructor Documentation

protocols::environment::claims::JumpClaim::JumpClaim	(	ClaimingMoverOP	owner,
		std::string const &	label,
		LocalPosition const &	jpos1,
		LocalPosition const &	jpos2,
		LocalPosition const &	cutp = LocalPosition( "", 0 )
	)

Referenced by clone().

Member Function Documentation

std::string const & protocols::environment::claims::JumpClaim::atom1

(

)

const

References atom1_.

Referenced by show(), and yield_elements().

std::string const & protocols::environment::claims::JumpClaim::atom2

(

)

const

References atom2_.

Referenced by show(), and yield_elements().

EnvClaimOP protocols::environment::claims::JumpClaim::clone ( ) const

virtual

Implements protocols::environment::claims::EnvClaim.

References JumpClaim().

void protocols::environment::claims::JumpClaim::ctrl_strength

(

ControlStrength const &

str

)

References c_str_, and protocols::kinmatch::str().

LocalPosition const & protocols::environment::claims::JumpClaim::cut_position ( ) const

protected

References cut_.

void protocols::environment::claims::JumpClaim::init_strength

(

InitializationStrength const &

str

)

References i_str_, and protocols::kinmatch::str().

std::string const & protocols::environment::claims::JumpClaim::label

(

)

const

References label_.

Referenced by yield_elements().

bool protocols::environment::claims::JumpClaim::physical ( ) const

inline

References physical_cut_.

Referenced by yield_elements().

void protocols::environment::claims::JumpClaim::physical ( bool  setting )

inline

References physical_cut_.

LocalPosition const & protocols::environment::claims::JumpClaim::pos1

(

)

const

References pos1_.

Referenced by show(), and yield_elements().

LocalPosition const & protocols::environment::claims::JumpClaim::pos2

(

)

const

References pos2_.

Referenced by show(), and yield_elements().

void protocols::environment::claims::JumpClaim::set_atoms	(	std::string const &	a1,
		std::string const &	a2
	)

References atom1_, and atom2_.

void protocols::environment::claims::JumpClaim::show ( std::ostream &  os ) const

virtual

Reimplemented from protocols::environment::claims::EnvClaim.

References atom1(), atom2(), protocols::environment::claims::EnvClaim::owner(), pos1(), pos2(), and str_type().

std::string protocols::environment::claims::JumpClaim::str_type ( ) const

virtual

Implements protocols::environment::claims::EnvClaim.

Referenced by show().

void protocols::environment::claims::JumpClaim::yield_elements ( core::environment::FoldTreeSketch const &  , JumpElements &    ) const

virtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

References protocols::environment::claims::JumpElement::atom1, atom1(), protocols::environment::claims::JumpElement::atom2, atom2(), protocols::environment::claims::JumpElement::has_physical_cut, protocols::environment::claims::JumpElement::label, label(), protocols::environment::claims::JumpElement::p1, protocols::environment::claims::JumpElement::p2, physical(), pos1(), and pos2().

virtual void protocols::environment::claims::JumpClaim::yield_elements ( core::environment::FoldTreeSketch const &  , RTElements &    ) const

virtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

virtual void protocols::environment::claims::JumpClaim::yield_elements ( core::environment::FoldTreeSketch const &  , CutElements &    ) const

virtual

build ResidueElements that indicate the introduction of a new peptide edge into the fold tree.

Reimplemented from protocols::environment::claims::EnvClaim.

Member Data Documentation

std::string protocols::environment::claims::JumpClaim::atom1_

private

Referenced by atom1(), and set_atoms().

std::string protocols::environment::claims::JumpClaim::atom2_

private

Referenced by atom2(), and set_atoms().

ControlStrength protocols::environment::claims::JumpClaim::c_str_

private

Referenced by ctrl_strength().

LocalPosition protocols::environment::claims::JumpClaim::cut_

private

Referenced by cut_position().

InitializationStrength protocols::environment::claims::JumpClaim::i_str_

private

Referenced by init_strength().

std::string protocols::environment::claims::JumpClaim::label_

private

Referenced by label().

bool protocols::environment::claims::JumpClaim::physical_cut_

private

Referenced by physical().

LocalPosition protocols::environment::claims::JumpClaim::pos1_

private

Referenced by pos1().

LocalPosition protocols::environment::claims::JumpClaim::pos2_

private

Referenced by pos2().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/environment/claims/JumpClaim.hh
• symlinks/rosetta/src/protocols/environment/claims/JumpClaim.cc