protocols::loop_modeling::refiners Namespace Reference

Algorithms for lowering loop region scores during sampling. More...

Classes
class	LocalMinimizationRefiner
	Refine sampled loops using Cartesian minimization. More...
class	RepackingRefiner
	Refine sampled loops using sidechain repacking. More...
class	RotamerTrialsRefiner
	Refine sampled loops using rotamer trials. More...

Typedefs
typedef owning_ptr < LocalMinimizationRefiner >	LocalMinimizationRefinerOP
typedef owning_ptr < LocalMinimizationRefiner const >	LocalMinimizationRefinerCOP
typedef owning_ptr < RepackingRefiner >	RepackingRefinerOP
typedef owning_ptr < RepackingRefiner const >	RepackingRefinerCOP
typedef owning_ptr < RotamerTrialsRefiner >	RotamerTrialsRefinerOP
typedef owning_ptr < RotamerTrialsRefiner const >	RotamerTrialsRefinerCOP

Detailed Description

Algorithms for lowering loop region scores during sampling.

the classes in the namespace are broadly supposed to be responsible for lowering the score in loop regions sampled using the algorithms in the samplers namespace. The primary refinement algorithms are RepackingRefiner, RotamerTrialsRefiner, and LocalMinimizationRefiner. These algorithms together account for the lion's share of the total running time in most loop modeling simulations.

Typedef Documentation

typedef owning_ptr<LocalMinimizationRefiner const> protocols::loop_modeling::refiners::LocalMinimizationRefinerCOP

typedef owning_ptr<LocalMinimizationRefiner> protocols::loop_modeling::refiners::LocalMinimizationRefinerOP

typedef owning_ptr<RepackingRefiner const> protocols::loop_modeling::refiners::RepackingRefinerCOP

typedef owning_ptr<RepackingRefiner> protocols::loop_modeling::refiners::RepackingRefinerOP

typedef owning_ptr<RotamerTrialsRefiner const> protocols::loop_modeling::refiners::RotamerTrialsRefinerCOP

typedef owning_ptr<RotamerTrialsRefiner> protocols::loop_modeling::refiners::RotamerTrialsRefinerOP