| AddMover(core::scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::monte_carlo::rna::AddMover | |
| append_other_pose(pose::Pose &pose, Size const offset, Size const other_pose_idx) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| append_residue(pose::Pose &pose, Size const offset) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| apply(core::pose::Pose &pose, Size const res_to_add_in_full_model_numbering, Size const res_to_build_off_in_full_model_numbering) | protocols::stepwise::monte_carlo::rna::AddMover | |
| apply(core::pose::Pose &pose, SWA_Move const &swa_move) | protocols::stepwise::monte_carlo::rna::AddMover | |
| apply(core::pose::Pose &pose_to_visualize) | protocols::stepwise::monte_carlo::rna::AddMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| check_same_chain(pose::Pose const &pose, Size const res_to_add_in_full_model_numbering, Size const res_to_build_off_in_full_model_numbering) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| check_same_chain(pose::Pose const &pose) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| do_append(core::pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| do_prepend(core::pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::monte_carlo::rna::AddMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| internal_cycles_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| kT_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| minimize_single_res_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| nucleoside_num_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prepend_other_pose(pose::Pose &pose, Size const offset, Size const other_pose_idx) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| prepend_residue(pose::Pose &pose, Size const offset) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| presample_added_residue_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| presample_by_swa_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| res_to_add_in_full_model_numbering_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| res_to_build_off_in_full_model_numbering_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| reset_status() | protocols::moves::Mover | |
| rna_torsion_mover_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| rsd_set_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| sample_by_monte_carlo_internal(core::pose::Pose &pose) const | protocols::stepwise::monte_carlo::rna::AddMover | private |
| sample_by_swa(core::pose::Pose &pose, Size const res_to_add) const | protocols::stepwise::monte_carlo::rna::AddMover | private |
| sample_range_large_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| sample_range_small_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_internal_cycles(Size const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_kT(core::Real const &setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_minimize_single_res(Size const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_presample_added_residue(Size const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_presample_by_swa(Size const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_sample_range_large(core::Real const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_sample_range_small(core::Real const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_start_added_residue_in_aform(Size const setting) | protocols::stepwise::monte_carlo::rna::AddMover | inline |
| set_stepwise_modeler(protocols::stepwise::sampling::StepWiseModelerOP stepwise_modeler) | protocols::stepwise::monte_carlo::rna::AddMover | |
| setup_initial_torsions(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::AddMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| start_added_residue_in_aform_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| stepwise_modeler_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| Strings typedef | protocols::moves::Mover | |
| suite_num_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| swa_move_ | protocols::stepwise::monte_carlo::rna::AddMover | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~AddMover() | protocols::stepwise::monte_carlo::rna::AddMover | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7