protocols::motif_hash::Xfrag Class Reference

#include <motif_hash_stuff.hh>

Public Member Functions
	Xfrag ()
	Xfrag (Real6 _rt, Size _position, uint8_t _size, char _sscomp, Real _bfac, Real _burial)
Real6	rt6 () const
Size	position () const
Size	size () const
char	sscomp () const
Real	bfac () const
Real	burial () const
Real	ex1 () const
Real	ex2 () const
Real	ex3 () const
Real	ex4 () const
void	rt6 (Real6 const &_rt6)
void	position (Size _position)
void	size (Size _size)
void	sscomp (char _sscomp)
void	bfac (Real _bfac)
void	burial (Real _burial)
void	ex1 (Real _ex1)
void	ex2 (Real _ex2)
void	ex3 (Real _ex3)
void	ex4 (Real _ex4)
void	insert (Pose &pose, vector1< Xfres > const &xfres, int lowres, int highres) const

Private Attributes
utility::fixedsizearray1 < uint16_t, 6 >	rt6_
uint32_t	position_
char	sscomp_
uint8_t	size_
uint8_t	bfac_
uint8_t	burial_
uint8_t	ex1_
uint8_t	ex2_
uint8_t	ex3_
uint8_t	ex4_

Constructor & Destructor Documentation

protocols::motif_hash::Xfrag::Xfrag ( )

inline

protocols::motif_hash::Xfrag::Xfrag	(	Real6	_rt,
		Size	_position,
		uint8_t	_size,
		char	_sscomp,
		Real	_bfac,
		Real	_burial
	)

References burial, and size().

Member Function Documentation

Real protocols::motif_hash::Xfrag::bfac

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::bfac

(

Real

_bfac

)

References protocols::motif_hash::real_to_uint8().

Real protocols::motif_hash::Xfrag::burial

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::burial

(

Real

_burial

)

References protocols::motif_hash::real_to_uint8().

Real protocols::motif_hash::Xfrag::ex1

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::ex1

(

Real

_ex1

)

References protocols::motif_hash::real_to_uint8().

Real protocols::motif_hash::Xfrag::ex2

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::ex2

(

Real

_ex2

)

References protocols::motif_hash::real_to_uint8().

Real protocols::motif_hash::Xfrag::ex3

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::ex3

(

Real

_ex3

)

References protocols::motif_hash::real_to_uint8().

Real protocols::motif_hash::Xfrag::ex4

(

)

const

References protocols::motif_hash::uint8_to_real().

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::ex4

(

Real

_ex4

)

References protocols::motif_hash::real_to_uint8().

void protocols::motif_hash::Xfrag::insert	(	Pose &	pose,
		vector1< Xfres > const &	xfres,
		int	lowres,
		int	highres
	)		const

References core::pose::Pose::append_polymer_residue_after_seqpos(), c, cout, core::conformation::ResidueFactory::create_residue(), core::kinematics::FoldTree::cutpoint(), core::pose::Pose::delete_polymer_residue(), core::kinematics::FoldTree::downstream_jump_residue(), core::pose::Pose::fold_tree(), core::chemical::ResidueTypeSet::name_map(), core::kinematics::FoldTree::num_cutpoint(), core::pose::Pose::num_jump(), core::pose::Pose::residue(), core::conformation::Residue::residue_type_set(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), size(), core::kinematics::FoldTree::upstream_jump_residue(), and utility_exit_with_message.

Size protocols::motif_hash::Xfrag::position

(

)

const

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::position

(

Size

_position

)

Real6 protocols::motif_hash::Xfrag::rt6

(

)

const

References basic::options::OptionKeys::mh::hash_cart_size, basic::options::option, protocols::motif_hash::ResPairMotif::rt6_, and protocols::motif_hash::uint16_to_real().

Referenced by protocols::motif_hash::operator<<().

void protocols::motif_hash::Xfrag::rt6

(

Real6 const &

_rt6

)

References basic::options::OptionKeys::mh::hash_cart_size, basic::options::option, protocols::motif_hash::real_to_uint16(), and protocols::motif_hash::ResPairMotif::rt6_.

Size protocols::motif_hash::Xfrag::size

(

)

const

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::size

(

Size

_size

)

char protocols::motif_hash::Xfrag::sscomp

(

)

const

Referenced by protocols::motif_hash::operator<<(), and protocols::motif_hash::operator>>().

void protocols::motif_hash::Xfrag::sscomp

(

char

_sscomp

)

Member Data Documentation

uint8_t protocols::motif_hash::Xfrag::bfac_

private

uint8_t protocols::motif_hash::Xfrag::burial_

private

uint8_t protocols::motif_hash::Xfrag::ex1_

private

uint8_t protocols::motif_hash::Xfrag::ex2_

private

uint8_t protocols::motif_hash::Xfrag::ex3_

private

uint8_t protocols::motif_hash::Xfrag::ex4_

private

uint32_t protocols::motif_hash::Xfrag::position_

private

utility::fixedsizearray1<uint16_t,6> protocols::motif_hash::Xfrag::rt6_

private

uint8_t protocols::motif_hash::Xfrag::size_

private

char protocols::motif_hash::Xfrag::sscomp_

private

---

The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.hh
• symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.cc