|
| file | CrystalContactsOperation.cc |
| | Exclude crystal contacts from design.
|
| |
| file | CrystalContactsOperation.fwd.hh |
| | Exclude crystal contacts from design.
|
| |
| file | CrystalContactsOperation.hh |
| | Exclude crystal contacts from design.
|
| |
| file | CrystalContactsOperationCreator.hh |
| | Exclude crystal contacts from design.
|
| |
| file | DatabaseThread.cc |
| | picks a sequence from database by start and end position on the pose
|
| |
| file | DatabaseThread.fwd.hh |
| |
| file | DatabaseThread.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | DatabaseThreadCreator.hh |
| |
| file | DesignAroundOperation.cc |
| |
| file | DesignAroundOperation.fwd.hh |
| |
| file | DesignAroundOperation.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | DesignAroundOperationCreator.hh |
| |
| file | ImportUnboundRotamersOperation.cc |
| | Import unbound (or native) rotamers into Rosetta!
|
| |
| file | ImportUnboundRotamersOperation.fwd.hh |
| |
| file | ImportUnboundRotamersOperation.hh |
| | rotamer set operation forward declaration
|
| |
| file | ImportUnboundRotamersOperationCreator.hh |
| |
| file | InterfaceTaskOperation.cc |
| | Base class for TaskOperations that will work with docking to define an interface.
|
| |
| file | InterfaceTaskOperation.fwd.hh |
| |
| file | InterfaceTaskOperation.hh |
| | Base class for TaskOperations that will work with docking to define an interface.
|
| |
| file | JointSequenceOperation.cc |
| | set designable residues to those observed in a set of structures
|
| |
| file | JointSequenceOperation.fwd.hh |
| |
| file | JointSequenceOperation.hh |
| | set every position to be designable to residues observed in a set of structures
|
| |
| file | JointSequenceOperationCreator.hh |
| |
| file | LayerOperations.cc |
| |
| file | LayerOperations.hh |
| |
| file | LayerOperationsCreator.hh |
| |
| file | LimitAromaChi2Operation.cc |
| | eliminate aromatic rotamers, of which chi2 are around 0, 180 degree. Chi2=0, 180 rotamers of aromatic residues ( PHE, TYR, HIS ) are not observed in nature very much, however Rosetta really like them. This is really pathology. For design purpose, we don't need them actually.
|
| |
| file | LimitAromaChi2Operation.fwd.hh |
| |
| file | LimitAromaChi2Operation.hh |
| | rotamer set operation forward declaration
|
| |
| file | LimitAromaChi2OperationCreator.hh |
| |
| file | LinkResidues.cc |
| |
| file | LinkResidues.fwd.hh |
| |
| file | LinkResidues.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | LinkResiduesCreator.hh |
| |
| file | ModifyAnnealer.cc |
| | Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
|
| |
| file | ModifyAnnealer.fwd.hh |
| | Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
|
| |
| file | ModifyAnnealer.hh |
| | Task operation to set high and low temps for annealer as well as whether or not to do a quench step.
|
| |
| file | ModifyAnnealerCreator.hh |
| |
| file | PreventChainFromRepackingOperation.cc |
| |
| file | PreventChainFromRepackingOperation.fwd.hh |
| |
| file | PreventChainFromRepackingOperation.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | PreventChainFromRepackingOperationCreator.hh |
| |
| file | PreventResiduesFromRepackingOperation.cc |
| |
| file | PreventResiduesFromRepackingOperation.fwd.hh |
| |
| file | PreventResiduesFromRepackingOperation.hh |
| | TaskOperation class that prevents a vector of residues indices from repacking parsed as a string that is comma delimited ",".
|
| |
| file | PreventResiduesFromRepackingOperationCreator.hh |
| |
| file | ProteinCoreResFilter.cc |
| |
| file | ProteinCoreResFilter.hh |
| |
| file | ProteinCoreResFilterCreator.hh |
| |
| file | ProteinInterfaceDesignOperation.cc |
| |
| file | ProteinInterfaceDesignOperation.fwd.hh |
| |
| file | ProteinInterfaceDesignOperation.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | ProteinInterfaceDesignOperationCreator.hh |
| |
| file | ReadResfileFromDB.cc |
| |
| file | ReadResfileFromDB.fwd.hh |
| | Forward declaration of the ReadResfileFromDB class.
|
| |
| file | ReadResfileFromDB.hh |
| | read a refile indexed by the input structure tag from a supplied relational database
|
| |
| file | ReadResfileFromDBCreator.hh |
| |
| file | RestrictByCalculatorsOperation.cc |
| | A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
|
| |
| file | RestrictByCalculatorsOperation.fwd.hh |
| | A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
|
| |
| file | RestrictByCalculatorsOperation.hh |
| | A class that applies arbitrary calculators (whose calculations return std::set< core::Size >) to restrict a PackerTask.
|
| |
| file | RestrictByCalculatorsOperationCreator.hh |
| |
| file | RestrictChainToRepackingOperation.cc |
| |
| file | RestrictChainToRepackingOperation.fwd.hh |
| |
| file | RestrictChainToRepackingOperation.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | RestrictChainToRepackingOperationCreator.hh |
| |
| file | RestrictIdentitiesAtAlignedPositions.cc |
| |
| file | RestrictIdentitiesAtAlignedPositions.fwd.hh |
| |
| file | RestrictIdentitiesAtAlignedPositions.hh |
| |
| file | RestrictIdentitiesAtAlignedPositionsCreator.hh |
| |
| file | RestrictInterGroupVectorOperation.cc |
| |
| file | RestrictInterGroupVectorOperation.fwd.hh |
| |
| file | RestrictInterGroupVectorOperation.hh |
| | restricts design to only those residues between two groups of structures
|
| |
| file | RestrictInterGroupVectorOperationCreator.hh |
| |
| file | RestrictNativeResiduesOperation.cc |
| | Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
|
| |
| file | RestrictNativeResiduesOperation.fwd.hh |
| |
| file | RestrictNativeResiduesOperation.hh |
| | Restrict every residue in the current pose that is native to repacking. ie, only allow mutated positions to be designed.
|
| |
| file | RestrictNativeResiduesOperationCreator.hh |
| |
| file | RestrictNonSurfaceToRepackingOperation.cc |
| |
| file | RestrictNonSurfaceToRepackingOperation.fwd.hh |
| |
| file | RestrictNonSurfaceToRepackingOperation.hh |
| |
| file | RestrictNonSurfaceToRepackingOperationCreator.hh |
| |
| file | RestrictOperationsBase.cc |
| | Base class for PoseMetricCalculator-using TaskOperations.
|
| |
| file | RestrictOperationsBase.fwd.hh |
| | Base class for PoseMetricCalculator-using TaskOperations.
|
| |
| file | RestrictOperationsBase.hh |
| | Base class for PoseMetricCalculator-using TaskOperations.
|
| |
| file | RestrictResiduesToRepackingOperation.cc |
| |
| file | RestrictResiduesToRepackingOperation.fwd.hh |
| |
| file | RestrictResiduesToRepackingOperation.hh |
| | TaskOperation class that restricts a vector of Size defined residues to repacking when parsed, it takes in a string and splits by ",".
|
| |
| file | RestrictResiduesToRepackingOperationCreator.hh |
| |
| file | RestrictToAlignedSegments.cc |
| |
| file | RestrictToAlignedSegments.fwd.hh |
| |
| file | RestrictToAlignedSegments.hh |
| |
| file | RestrictToAlignedSegmentsCreator.hh |
| |
| file | RestrictToCDRH3Loop.cc |
| |
| file | RestrictToCDRH3Loop.fwd.hh |
| | Forward declaration of the RestrictToCDRH3Loop class.
|
| |
| file | RestrictToCDRH3Loop.hh |
| | This class allows the selection for packing of the Antibody CDR-H3 loop by taking advantage of the PDB numbering schemes that are commonly used for Antibodies.
|
| |
| file | RestrictToCDRH3LoopCreator.hh |
| |
| file | RestrictToInterface.cc |
| |
| file | RestrictToInterface.fwd.hh |
| |
| file | RestrictToInterface.hh |
| |
| file | RestrictToInterfaceCreator.hh |
| |
| file | RestrictToInterfaceOperation.cc |
| | TaskOperation class that finds an interface and leaves it mobile in the PackerTask.
|
| |
| file | RestrictToInterfaceOperation.fwd.hh |
| | Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
|
| |
| file | RestrictToInterfaceOperation.hh |
| | TaskOperation class that finds an interface and makes it mobile in the PackerTask.
|
| |
| file | RestrictToInterfaceOperationCreator.hh |
| |
| file | RestrictToInterfaceVectorOperation.cc |
| | TaskOperation class that finds an interface based on: core/pack/task/operation/util/interface_vector_calculate.hh and leaves it mobile in the PackerTask.
|
| |
| file | RestrictToInterfaceVectorOperation.fwd.hh |
| | Forward declaration of a TaskOperation class that finds an interface leaves it mobile in the PackerTask.
|
| |
| file | RestrictToInterfaceVectorOperation.hh |
| | TaskOperation class that finds an interface based on InterfaceVectorDefinition and leaves it mobile in the PackerTask. Serves mostly to wrap InterfaceVectorDefinition into a TaskOperation. see src/core/pack/task/operation/util/interface_vector_calculate.hh.
|
| |
| file | RestrictToInterfaceVectorOperationCreator.hh |
| |
| file | RestrictToLoopsAndNeighbors.cc |
| |
| file | RestrictToLoopsAndNeighbors.fwd.hh |
| | Forward declaration of the RestrictToLoopsAndNeighbors class.
|
| |
| file | RestrictToLoopsAndNeighbors.hh |
| | This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A.
|
| |
| file | RestrictToLoopsAndNeighborsCreator.hh |
| | Creator class for the RestrictToLoopsAndNeighbors TaskOperation.
|
| |
| file | RestrictToMoveMapChiOperation.cc |
| |
| file | RestrictToMoveMapChiOperation.fwd.hh |
| |
| file | RestrictToMoveMapChiOperation.hh |
| | Makes it easier to use TF and MM in the same class.
|
| |
| file | RestrictToMoveMapChiOperationCreator.hh |
| |
| file | RestrictToNeighborhoodOperation.cc |
| | TaskOperation class that finds a neighborhood and leaves it mobile in the PackerTask.
|
| |
| file | RestrictToNeighborhoodOperation.fwd.hh |
| | Forward declaration of a TaskOperation class that finds a neighborhood; leaves it mobile in the PackerTask.
|
| |
| file | RestrictToNeighborhoodOperation.hh |
| | TaskOperation class that finds a neighborhood and makes it mobile in the PackerTask.
|
| |
| file | RestrictToNeighborhoodOperationCreator.hh |
| |
| file | RestrictToTerminiOperation.cc |
| |
| file | RestrictToTerminiOperation.fwd.hh |
| | Restrict to packing only the residues at either or both termini.
|
| |
| file | RestrictToTerminiOperation.hh |
| |
| file | RestrictToTerminiOperationCreator.hh |
| |
| file | SelectByDensityFitOperation.cc |
| |
| file | SelectByDensityFitOperation.fwd.hh |
| |
| file | SelectByDensityFitOperation.hh |
| |
| file | SelectByDensityFitOperationCreator.hh |
| |
| file | SelectBySASAOperation.cc |
| |
| file | SelectBySASAOperation.fwd.hh |
| |
| file | SelectBySASAOperation.hh |
| |
| file | SelectBySASAOperationCreator.hh |
| |
| file | SelectResiduesWithinChain.cc |
| |
| file | SelectResiduesWithinChain.fwd.hh |
| |
| file | SelectResiduesWithinChain.hh |
| |
| file | SelectResiduesWithinChainCreator.hh |
| |
| file | SeqprofConsensusOperation.cc |
| | set designable residues to those observed in sequence profile
|
| |
| file | SeqprofConsensusOperation.fwd.hh |
| |
| file | SeqprofConsensusOperation.hh |
| |
| file | SeqprofConsensusOperationCreator.hh |
| |
| file | SetIGTypeOperation.cc |
| | Task operation to set interaction graph type (linmem, lazy or double lazy)
|
| |
| file | SetIGTypeOperation.fwd.hh |
| | Task operation to set Interaction graph Type.
|
| |
| file | SetIGTypeOperation.hh |
| | Task operation to set interaction graph type (linear memory, lazy or double lazy)
|
| |
| file | SetIGTypeOperationCreator.hh |
| |
| file | ThreadSequenceOperation.cc |
| |
| file | ThreadSequenceOperation.fwd.hh |
| |
| file | ThreadSequenceOperation.hh |
| | TaskOperation class that restricts a chain to repacking.
|
| |
| file | ThreadSequenceOperationCreator.hh |
| |
1.8.7