- b -

• Base : protocols::jd2::WriteFileSFB
• BaseClass : protocols::abinitio::ConstraintFragmentSampler , protocols::abinitio::FragmentSampler , protocols::abinitio::Protocol
• BatchList : protocols::abinitio::HedgeArchive , protocols::jd2::archive::ArchiveManager
• BatchStructuresMap : protocols::abinitio::HedgeArchive
• BB_Pos : protocols::fldsgn::potentials::sspot::HSPairPotential , protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential , protocols::fldsgn::potentials::sspot::SSPairPotential , protocols::fldsgn::topology::SS_Base , protocols::fldsgn::topology::SS_Info2
• BBTorsionSRFD : protocols::frag_picker::VallResidue
• BBTorsionSRFDOP : protocols::frag_picker::VallResidue
• BiasVector : protocols::environment::EnvClaimBroker
• Bin3D : protocols::match::Bool3DGrid , protocols::match::Bool3DGridKinemageWriter , protocols::match::BumpGrid
• Bin6D : protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::VoxelSetIterator
• bin_index_hasher : protocols::motif_hash::MotifHash , protocols::motif_hash::XformScore , protocols::motif_hash::XfragSet
• BIOPConstIterator : protocols::forge::build::BuildManager , protocols::forge::components::VarLengthBuild
• BIOPIterator : protocols::forge::build::BuildManager
• BlosumMatrix : protocols::sparta::Sparta::SpartaLib
• BluePrint : protocols::fldsgn::BluePrintBDR , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::flxbb::FlxbbDesign
• BluePrintOP : protocols::fldsgn::BluePrintBDR , protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::SheetConstraintsRCG , protocols::flxbb::FlxbbDesign
• BondAngleKey : protocols::backrub::BackrubSegment
• BoundedCollectorCOP : protocols::frag_picker::BoundedCollector< StrictWeakOrdering >
• BoundedCollectorOP : protocols::frag_picker::BoundedCollector< StrictWeakOrdering >
• BoundingBox : protocols::match::Bool3DGrid , protocols::match::BumpGrid , protocols::match::downstream::ActiveSiteGrid , protocols::match::HitHasher , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::Matcher , protocols::match::MatcherTask , protocols::match::OccupiedSpaceHash , protocols::match::VoxelSetIterator
• BufferMap : protocols::jd2::SingleFileBuffer
• Buffers : protocols::jd2::MpiFileBuffer
• BuildInstructionCAPs : protocols::forge::build::BuildInstruction
• BuildInstructionOP : protocols::fldsgn::BluePrintBDR , protocols::forge::components::BDR , protocols::forge::remodel::RemodelMover
• BuildInstructionOPs : protocols::forge::build::BuildManager
• BuildManager : protocols::fldsgn::BluePrintBDR , protocols::forge::components::BDR , protocols::forge::components::VarLengthBuild , protocols::forge::remodel::RemodelMover