- l -

• L2DChiralMap() : protocols::simple_moves::chiral
• let_rigid_body_jumps_move() : protocols::farna
• lib_full_path() : protocols::canonical_sampling::mc_convergence_checks
• limit_chunk_size() : protocols::nonlocal
• limit_rotamer_set() : protocols::multistate_design
• linear_chainbreak() : protocols::forge::methods
• linker_count2score() : protocols::sic_dock
• list_amino_acid_options() : protocols::multistate_design
• load_avge_polynomial_coefficients() : protocols::sasa_scores
• load_build_position_data() : protocols::motifs
• load_checkpoint() : protocols::dna
• load_component_weights() : protocols::optimize_weights
• load_coords_and_torsions() : protocols::loops::loop_closure::ccd
• load_dna_design_defs_from_file() : protocols::dna
• load_dna_design_defs_from_options() : protocols::dna
• load_dna_design_defs_from_strings() : protocols::dna
• load_loop_definitions() : protocols::loops::loops_definers
• load_motifs() : protocols::motif_hash
• load_s_and_l() : protocols::jobdist , protocols::stepwise
• load_sasapack_polynomial_coefficients() : protocols::sasa_scores
• look_for_jumps() : protocols::stepwise::sampling::rna::sugar
• look_for_jumps_to_next() : protocols::stepwise::sampling::rna::sugar
• look_for_jumps_to_previous() : protocols::stepwise::sampling::rna::sugar
• look_for_non_jump_reference_to_next() : protocols::stepwise::sampling::rna::sugar
• look_for_non_jump_reference_to_previous() : protocols::stepwise::sampling::rna::sugar
• look_for_unique_jump_to_moving_res() : protocols::stepwise
• loop_local_rmsd() : protocols::loops
• loop_rmsd() : protocols::loops
• loop_rmsd_with_superimpose() : protocols::loops
• loop_rmsd_with_superimpose_core() : protocols::loops
• loop_stop_comp() : protocols::abinitio::abscript
• LoopBuild_main() : protocols::loop_build
• loopfinder() : protocols::loops
• loophash_main() : protocols::loophash
• loops_are_closed() : protocols::comparative_modeling
• loops_around_residues() : protocols::loops
• loops_from_alignment() : protocols::comparative_modeling
• loops_from_string() : protocols::loops
• loops_from_transitive_alignments() : protocols::comparative_modeling
• loops_set_chainbreak_weight() : protocols::loops::loop_mover
• loops_set_move_map() : protocols::loops
• lt_OP_deref() : protocols::genetic_algorithm
• lzs() : protocols::kinmatch