Here is a list of all namespace members with links to the namespace documentation for each member:

- t -

• T : protocols::features::RelevantResiduesMode
• TabooSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TabooSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TAG_DEFINITION : protocols::stepwise::screener
• tag_from_pdb_fname() : protocols::motif_hash
• TagCOP : protocols::filters , protocols::rosetta_scripts
• TagCOPs : protocols::rosetta_scripts
• TagDefinitionCOP : protocols::stepwise::screener
• TagDefinitionOP : protocols::stepwise::screener
• TagOP : protocols::rosetta_scripts
• TargetRotamerCoordsCOP : protocols::match::downstream
• TargetRotamerCoordsOP : protocols::match::downstream
• TaskAwareCstsCOP : protocols::protein_interface_design::movers
• TaskAwareCstsOP : protocols::protein_interface_design::movers
• TaskAwareMinMoverCOP : protocols::simple_moves
• TaskAwareMinMoverOP : protocols::simple_moves
• tccd : protocols::loops::loop_closure::ccd
• tear_down_constraints() : protocols::star
• TemlateAssemblyCOP : protocols::hybridization
• TemlateAssemblyOP : protocols::hybridization
• TemperatureControllerAP : protocols::canonical_sampling , protocols::moves
• TemperatureControllerCAP : protocols::canonical_sampling , protocols::moves
• TemperatureControllerCOP : protocols::canonical_sampling , protocols::moves
• TemperatureControllerOP : protocols::canonical_sampling , protocols::moves
• TemperedDockingOP : protocols::docking
• TemplateCOP : protocols::abinitio
• TemplateFragmentClaimerAP : protocols::topology_broker
• TemplateFragmentClaimerCAP : protocols::topology_broker
• TemplateFragmentClaimerCOP : protocols::topology_broker
• TemplateFragmentClaimerOP : protocols::topology_broker
• TemplateHistoryCOP : protocols::hybridization
• TemplateHistoryOP : protocols::hybridization
• TemplateJumpClaimerAP : protocols::topology_broker
• TemplateJumpClaimerCAP : protocols::topology_broker
• TemplateJumpClaimerCOP : protocols::topology_broker
• TemplateJumpClaimerOP : protocols::topology_broker
• TemplateJumpSetupCOP : protocols::abinitio
• TemplateJumpSetupOP : protocols::abinitio
• TemplateOP : protocols::abinitio
• templates_from_cmd_line() : protocols::comparative_modeling
• TemplatesCOP : protocols::abinitio
• TemplatesOP : protocols::abinitio
• Tensor : protocols::scoring
• TermInfo : protocols::sic_dock
• test_merge_and_slice_with_two_helix_test_case() : protocols::stepwise
• test_res_res_aln() : protocols::protein_interface_design::movers
• tether_ligand_tracer : protocols::ligand_docking
• TetherLigandCOP : protocols::ligand_docking
• TetherLigandCOPs : protocols::ligand_docking
• TetherLigandOP : protocols::ligand_docking
• TetherLigandOPs : protocols::ligand_docking
• TEXT_BUFSIZE : protocols::boinc
• ThermodynamicMoverCOP : protocols::canonical_sampling
• ThermodynamicMoverOP : protocols::canonical_sampling
• ThermodynamicObserverCOP : protocols::canonical_sampling
• ThermodynamicObserverOP : protocols::canonical_sampling
• Thio : protocols::fldsgn::topology
• Thioredoxin : protocols::fldsgn::topology
• ThreadingJobCOP : protocols::comparative_modeling
• ThreadingJobInputterCOP : protocols::comparative_modeling
• ThreadingJobInputterOP : protocols::comparative_modeling
• ThreadingJobOP : protocols::comparative_modeling
• ThreadSequenceOperationCOP : protocols::toolbox::task_operations
• ThreadSequenceOperationOP : protocols::toolbox::task_operations
• THREE_PRIME_PHOSPHATE : protocols::stepwise::sampling::rna::phosphate
• TimeEvaluatorCOP : protocols::evaluation
• TimeEvaluatorOP : protocols::evaluation
• TMalign_poses() : protocols::hybridization
• to_centroid() : protocols::medal , protocols::star
• to_string() : protocols::moves , protocols::stepwise::monte_carlo , protocols::stepwise::sampling::rna::phosphate
• Tokenize() : protocols::rbsegment_relax
• tokenize() : protocols::stepwise::sampling::rna
• Tokenize() : protocols
• TOL_H_DIRECT() : protocols::noesy_assign
• TOL_H_INDIRECT() : protocols::noesy_assign
• TOL_LABEL() : protocols::noesy_assign
• Top7 : protocols::fldsgn::topology
• TopEntitySetCOP : protocols::pack_daemon
• TopEntitySetOP : protocols::pack_daemon
• TopologyBrokerAP : protocols::topology_broker
• TopologyBrokerCAP : protocols::topology_broker
• TopologyBrokerCOP : protocols::topology_broker
• TopologyBrokerMoverCOP : protocols::protein_interface_design::movers
• TopologyBrokerMoverOP : protocols::protein_interface_design::movers
• TopologyBrokerOP : protocols::topology_broker
• TopologyClaimerAP : protocols::topology_broker
• TopologyClaimerCAP : protocols::topology_broker
• TopologyClaimerCOP : protocols::topology_broker
• TopologyClaimerOP : protocols::topology_broker
• torsion2big_bin() : protocols::frags
• torsion2big_bin_id() : protocols::frag_picker::quota
• torsion_constraints_from_chi_rotamers() : protocols::ligand_docking
• torsion_constraints_from_mean_sd() : protocols::ligand_docking
• torsion_constraints_from_rotamers() : protocols::ligand_docking
• torsion_dev_score() : protocols::frags
• TorsionBin : protocols::comparative_modeling::features
• TorsionBinSimilarityCOP : protocols::frag_picker::scores
• TorsionBinSimilarityOP : protocols::frag_picker::scores
• TorsionClaimAP : protocols::environment::claims
• TorsionClaimCAP : protocols::environment::claims
• TorsionClaimCOP : protocols::environment::claims
• TorsionClaimOP : protocols::environment::claims
• TorsionCOP : protocols::protein_interface_design::filters
• TorsionDOFMoverCOP : protocols::simple_moves
• TorsionDOFMoverOP : protocols::simple_moves
• TorsionElements : protocols::environment::claims
• TorsionFeatureCOP : protocols::comparative_modeling::features
• TorsionFeatureOP : protocols::comparative_modeling::features
• TorsionFragmentLibraryCOP : protocols::frags
• TorsionFragmentLibraryOP : protocols::frags
• TorsionFragmentMoverOP : protocols::frags
• TorsionFragmentOP : protocols::frags
• TorsionNormalModeMoverCOP : protocols::normalmode
• TorsionNormalModeMoverOP : protocols::normalmode
• TorsionOP : protocols::protein_interface_design::filters
• TorsionRestrictedKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionRestrictedKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSweepingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• TorsionSweepingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• total : protocols::analysis
• TotalSasaFilterCOP : protocols::simple_filters
• TotalSasaFilterOP : protocols::simple_filters
• TR : protocols::abinitio , protocols::antibody::clusters , protocols::antibody
• tr : protocols::boinc
• TR : protocols::canonical_sampling::mc_convergence_checks
• tr : protocols::canonical_sampling
• TR : protocols::cartesian , protocols::checkpoint
• tr : protocols::cluster
• TR : protocols::coarse_rna
• tr : protocols::comparative_modeling
• TR : protocols::constraints_additional , protocols::contact_map , protocols::cryst , protocols::design_opt , protocols::dna , protocols::electron_density
• tr : protocols::enzdes::enzutil , protocols::enzdes
• TR : protocols::enzdes
• tr : protocols::evaluation , protocols::farna
• TR : protocols::farna , protocols::features
• tr : protocols::features
• TR : protocols::features , protocols::fibril , protocols::filters , protocols::fldsgn::potentials , protocols::fldsgn , protocols::flexpack::annealer , protocols::flexpack::interaction_graph , protocols::flexpack::rotamer_set
• tr : protocols::flexpack
• TR : protocols::forge::build , protocols::forge::components , protocols::forge::methods , protocols::forge::remodel , protocols::frag_picker::nonlocal
• tr : protocols::frag_picker::scores , protocols::frag_picker
• TR : protocols::frag_picker , protocols::frags , protocols::genetic_algorithm , protocols::hotspot_hashing::movers , protocols::hotspot_hashing
• tr : protocols::hotspot_hashing
• TR : protocols::hotspot_hashing , protocols::hybridization , protocols::idealize , protocols::inputter , protocols::jd2::parser
• tr : protocols::jd2
• TR : protocols::jd2
• tr : protocols::jobdist
• TR : protocols::jobdist
• tr : protocols::jumping , protocols::ligand_docking::rdf
• TR() : protocols::ligand_docking , protocols::loop_build , protocols::loop_modeling::loggers , protocols::loophash
• tr : protocols::loops::loop_closure::ccd
• TR : protocols::loops::loop_closure::kinematic_closure , protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine , protocols::loops::loops_definers
• tr : protocols::loops::loops_definers
• TR : protocols::loops::loops_definers , protocols::loops
• tr : protocols::loops
• TR : protocols::loops
• tr : protocols::loops
• TR : protocols::match::downstream , protocols::match::output
• tr : protocols::match
• TR : protocols::match
• tr : protocols::match
• TR : protocols::match , protocols::match::upstream , protocols::md , protocols::medal , protocols::motif_grafting::movers , protocols::motif_hash , protocols::motifs
• tr : protocols::moves
• TR : protocols::moves , protocols::multistate_design , protocols::neighbor
• tr : protocols::noesy_assign
• TR : protocols::nonlocal , protocols::optimize_weights , protocols::outputter , protocols::pack_daemon , protocols::pb_potential , protocols::pmut_scan , protocols::pockets
• tr : protocols::protein_interface_design::filters
• TR : protocols::protein_interface_design::filters , protocols::protein_interface_design::movers
• tr : protocols::protein_interface_design::movers
• TR : protocols::protein_interface_design::movers , protocols::qsar::scoring_grid , protocols::qsar
• tr : protocols::rbsegment_relax
• TR : protocols::rbsegment_relax , protocols::relax , protocols::rigid , protocols::rosetta_scripts , protocols::rotamer_recovery
• tr : protocols::rotamer_recovery
• TR : protocols::rotamer_recovery , protocols::rotamer_sampler::rna , protocols::rpc , protocols::seeded_abinitio , protocols::sic_dock::scores , protocols::sic_dock , protocols::simple_filters
• tr : protocols::simple_filters
• TR : protocols::simple_filters , protocols::simple_moves::asym_fold_and_dock , protocols::simple_moves::rational_mc , protocols::simple_moves::sidechain_moves , protocols::simple_moves::symmetry , protocols::simple_moves
• tr : protocols::simple_moves
• TR : protocols::simple_moves
• tr : protocols::sparta , protocols::ss_prediction
• TR : protocols::star , protocols::symmetric_docking
• tr : protocols::toolbox::match_enzdes_util
• TR : protocols::toolbox::match_enzdes_util
• tr : protocols::toolbox::match_enzdes_util
• TR : protocols::toolbox::match_enzdes_util , protocols::toolbox::pose_manipulation , protocols::toolbox::pose_metric_calculators
• tr : protocols::toolbox::rotamer_set_operations , protocols::toolbox
• TR : protocols , protocols::trajectory , protocols::vip , protocols::wum2 , protocols::wum
• TR_call_order : protocols::rosetta_scripts
• TR_ccd : protocols::seeded_abinitio
• TR_cst : protocols::protein_interface_design::movers
• TR_database : protocols::protein_interface_design::filters
• TR_debug : protocols::seeded_abinitio
• TR_DI : protocols::toolbox::pose_manipulation
• TR_pcs_d : protocols::scoring::methods::pcs
• TR_PCS_d_i : protocols::scoring::methods::pcs
• TR_PCS_d_i_Ts1 : protocols::scoring::methods::pcsTs1
• TR_PCS_d_i_Ts2 : protocols::scoring::methods::pcsTs2
• TR_PCS_d_i_Ts3 : protocols::scoring::methods::pcsTs3
• TR_PCS_d_i_Ts4 : protocols::scoring::methods::pcsTs4
• TR_pcs_d_p_l : protocols::scoring::methods::pcs
• TR_pcs_d_p_l_Ts1 : protocols::scoring::methods::pcsTs1
• TR_pcs_d_p_l_Ts2 : protocols::scoring::methods::pcsTs2
• TR_pcs_d_p_l_Ts3 : protocols::scoring::methods::pcsTs3
• TR_pcs_d_p_l_Ts4 : protocols::scoring::methods::pcsTs4
• TR_pcs_d_Ts1 : protocols::scoring::methods::pcsTs1
• TR_pcs_d_Ts2 : protocols::scoring::methods::pcsTs2
• TR_pcs_d_Ts3 : protocols::scoring::methods::pcsTs3
• TR_pcs_d_Ts4 : protocols::scoring::methods::pcsTs4
• TR_PCS_Energy : protocols::scoring::methods::pcs
• TR_PCS_Energy_Ts1 : protocols::scoring::methods::pcsTs1
• TR_PCS_Energy_Ts2 : protocols::scoring::methods::pcsTs2
• TR_PCS_Energy_Ts3 : protocols::scoring::methods::pcsTs3
• TR_PCS_Energy_Ts4 : protocols::scoring::methods::pcsTs4
• TR_PcsDataCenter : protocols::scoring::methods::pcs2
• TR_PcsDataCenterManager : protocols::scoring::methods::pcs2
• TR_PcsDataCenterManagerSingleton : protocols::scoring::methods::pcs2
• TR_PcsDataLanthanide : protocols::scoring::methods::pcs2
• TR_PcsEnergy : protocols::scoring::methods::pcs2
• TR_PcsEnergyParameter : protocols::scoring::methods::pcs2
• TR_PcsEnergyParameterManager : protocols::scoring::methods::pcs2
• TR_PcsInputCenter : protocols::scoring::methods::pcs2
• TR_PcsInputCenterManager : protocols::scoring::methods::pcs2
• TR_PcsInputFile : protocols::scoring::methods::pcs2
• TR_PcsInputLine : protocols::scoring::methods::pcs2
• TR_pymol : protocols::protein_interface_design::filters
• TR_report : protocols::protein_interface_design::movers , protocols::rosetta_scripts
• TR_residue_scan : protocols::protein_interface_design::filters
• TR_seg : protocols::rbsegment_relax
• TR_spec : protocols::dna
• TR_TensorsOptimizer : protocols::scoring::methods::pcs2
• TR_TensorsOptimizerFix : protocols::scoring::methods::pcs2
• TR_TensorsOptimizerSvd : protocols::scoring::methods::pcs2
• TR_tsr_opt : protocols::scoring::methods::pcs
• TR_tsr_opt_Ts1 : protocols::scoring::methods::pcsTs1
• TR_tsr_opt_Ts2 : protocols::scoring::methods::pcsTs2
• TR_tsr_opt_Ts3 : protocols::scoring::methods::pcsTs3
• TR_tsr_opt_Ts4 : protocols::scoring::methods::pcsTs4
• TR_VERBOSE : protocols::optimize_weights
• trABEGO_SS_Config : protocols::frag_picker::quota
• trABEGO_SS_Pool : protocols::frag_picker::quota
• trABEGO_SS_Score : protocols::frag_picker::scores
• tracer : protocols::frag_picker
• trAdaptiveScoreHistogram : protocols::frag_picker::scores
• TrajectoryRecorderOP : protocols::canonical_sampling
• TrajectoryState : protocols::viewer::graphics_states_param
• trAmbigCSScore : protocols::frag_picker::scores
• trans_omega() : protocols::forge::methods
• trans_pose() : protocols::sic_dock
• transform_moving_partition_to_origin() : protocols::rotamer_sampler::rigid_body
• transform_tracer : protocols::ligand_docking
• TransientCutpointHandlerCOP : protocols::stepwise::monte_carlo::rna
• TransientCutpointHandlerOP : protocols::stepwise::monte_carlo::rna
• translate() : protocols::stepwise
• translate_and_rotate_residue_to_origin() : protocols::stepwise
• translate_then_rotate_pose() : protocols::stepwise::sampling::rna::rigid_body
• translate_tracer : protocols::ligand_docking
• translate_virtual_anchor_to_first_rigid_body() : protocols::farna
• TranslateCOP : protocols::ligand_docking
• TranslateCOPs : protocols::ligand_docking
• TranslateOP : protocols::ligand_docking
• TranslateOPs : protocols::ligand_docking
• trAtomBasedConstraintsScore : protocols::frag_picker::scores
• trAtomPairConstraintsScore : protocols::frag_picker::scores
• trBestTotalScoreSelector : protocols::frag_picker
• TRBM : protocols::rigid
• trCSScore : protocols::frag_picker::scores
• trCustomScoreSelector : protocols::frag_picker
• trDihedralConstraintsScore : protocols::frag_picker::scores
• trDiversifyCrmsdByClustering : protocols::frag_picker
• trDiversifyCrmsdSelector : protocols::frag_picker
• trDiversifyDihedralsSelector : protocols::frag_picker
• trDMEScore : protocols::frag_picker::scores
• tree_distance() : protocols::backrub
• TreeBuilderCOP : protocols::nonlocal
• TreeBuilderOP : protocols::nonlocal
• trFragmentCandidate : protocols::frag_picker
• trg_RG : protocols::enzdes
• trGunnCost : protocols::frag_picker::scores , protocols::simple_moves
• trGunnScore : protocols::frag_picker::scores
• TrialCounterCOP : protocols::moves
• TrialCounterOP : protocols::moves
• TrialMoverCOP : protocols::moves
• TrialMoverOP : protocols::moves
• Trigger : protocols::medal
• Triggers : protocols::simple_moves::rational_mc
• trim_back_sequence_mapping() : protocols::loops
• trInterbondAngleScore : protocols::frag_picker::scores
• TrisBpyScoreCOP : protocols::sic_dock::scores
• TrisBpyScoreOP : protocols::sic_dock::scores
• trJCoupling : protocols::frag_picker::scores
• trJCouplingIO : protocols::frag_picker
• trPartialSecondarySimilarity : protocols::frag_picker::scores
• trPdbFilter : protocols::frag_picker
• trPDDFEnergy : protocols::scoring::methods::saxs
• trPhiPsiRmsd : protocols::frag_picker::scores
• trProfScore : protocols::frag_picker::scores
• trProfScoreBlosum62 : protocols::frag_picker::scores
• trProfScoreDistWeight : protocols::frag_picker::scores
• trProfScoreL1 : protocols::frag_picker::scores
• trProfScoreSubMatrix : protocols::frag_picker::scores
• trQuotaCollector : protocols::frag_picker::quota
• trQuotaConfig : protocols::frag_picker::quota
• trQuotaSelector : protocols::frag_picker::quota
• trRDCScore : protocols::frag_picker::scores
• trRmsScore : protocols::frag_picker::scores
• trSecondarySimilarity : protocols::frag_picker::scores
• trSecondaryStructurePool : protocols::frag_picker::quota
• trTalosSSSimilarity : protocols::frag_picker::scores
• trTmScore : protocols::frag_picker::scores
• trTorsionBinPool : protocols::frag_picker::quota
• try_reroot_at_fixed_domain() : protocols::stepwise
• TS : protocols::rbsegment_relax
• tt : protocols::loops
• type2name() : protocols::frag_picker
• TypesMap : protocols::dna
• TZ : protocols::hybridization , protocols::simple_moves::symmetry