- d -

DaemonSetCOP : protocols::pack_daemon
DaemonSetOP : protocols::pack_daemon
DarcParticleSwarmMinimizerCOP : protocols::pockets
DarcParticleSwarmMinimizerOP : protocols::pockets
DatabaseEntryWorkUnitCOP : protocols::wum
DatabaseEntryWorkUnitOP : protocols::wum
DatabaseFilterCOP : protocols::features
DatabaseFilterOP : protocols::features
DatabaseJobInputterOP : protocols::features
DatabaseJobOutputterOP : protocols::features
DatabaseThreadCOP : protocols::toolbox::task_operations
DatabaseThreadOP : protocols::toolbox::task_operations
DataLoaderCOP : protocols::jd2::parser
DataLoaderCreatorCOP : protocols::jd2::parser
DataLoaderCreatorOP : protocols::jd2::parser
DataLoaderOP : protocols::jd2::parser
DbTrajectoryReaderCOP : protocols::canonical_sampling , protocols::trajectory
DbTrajectoryReaderOP : protocols::canonical_sampling , protocols::trajectory
DbTrajectoryRecorderCOP : protocols::canonical_sampling
DbTrajectoryRecorderOP : protocols::canonical_sampling
DbTrajectoryWriterCOP : protocols::trajectory
DbTrajectoryWriterOP : protocols::trajectory
DDGBindOptEDataOP : protocols::optimize_weights
ddGCOP : protocols::simple_moves
DdgFilterCOP : protocols::simple_filters
DdgFilterOP : protocols::simple_filters
DDGMutationOptEDataOP : protocols::optimize_weights
ddGOP : protocols::simple_moves
ddGs : protocols::ddg
DecomposeAndReweightEnergiesCalculatorCOP : protocols::toolbox::pose_metric_calculators
DecomposeAndReweightEnergiesCalculatorOP : protocols::toolbox::pose_metric_calculators
DecoySetEvaluationCOP : protocols::toolbox
DecoySetEvaluationOP : protocols::toolbox
DeleteMoverOP : protocols::stepwise::monte_carlo::rna
DelphiElectrostaticsCOP : protocols::pockets
DelphiElectrostaticsOP : protocols::pockets
DeltaFilterCOP : protocols::simple_filters
DeltaFilterOP : protocols::simple_filters
DenseIGRepackerCOP : protocols::pack_daemon
DenseIGRepackerOP : protocols::pack_daemon
DensityScoringClaimerAP : protocols::topology_broker
DensityScoringClaimerCAP : protocols::topology_broker
DensityScoringClaimerCOP : protocols::topology_broker
DensityScoringClaimerOP : protocols::topology_broker
DenyPdbIdFilterCOP : protocols::frag_picker
DenyPdbIdFilterOP : protocols::frag_picker
DesignableResiduesFilterCOP : protocols::protein_interface_design::filters
DesignableResiduesFilterOP : protocols::protein_interface_design::filters
DesignAroundOperationCOP : protocols::toolbox::task_operations
DesignAroundOperationOP : protocols::toolbox::task_operations
DesignInstructions : protocols::antibody::design
DesignRepackMoverCOP : protocols::simple_moves
DesignRepackMoverOP : protocols::simple_moves
DesignTask_LayerOP : protocols::flxbb
DesignTask_NormalOP : protocols::flxbb
DesignTaskOP : protocols::flxbb
DesignTaskSet : protocols::flxbb
DesignTaskSetOP : protocols::flxbb
DesignVsNativeComparisonOP : protocols::enzdes
DetectProteinLigandInterfaceAP : protocols::enzdes
DetectProteinLigandInterfaceCAP : protocols::enzdes
DetectProteinLigandInterfaceCOP : protocols::enzdes
DetectProteinLigandInterfaceOP : protocols::enzdes
DetectSymmetryMoverCOP : protocols::simple_moves::symmetry
DetectSymmetryMoverOP : protocols::simple_moves::symmetry
DGBindOptEDataCOP : protocols::optimize_weights
DGBindOptEDataOP : protocols::optimize_weights
DihedralConstraintsScoreCOP : protocols::frag_picker::scores
DihedralConstraintsScoreOP : protocols::frag_picker::scores
DimerPairingCOP : protocols::fldsgn::topology
DimerPairingOP : protocols::fldsgn::topology
DistanceMap : protocols::noesy_assign
DistanceResidueNetworkCOP : protocols::toolbox
DistanceResidueNetworkOP : protocols::toolbox
DistanceScoreMoverAP : protocols::noesy_assign
DistanceScoreMoverCAP : protocols::noesy_assign
DistanceScoreMoverCOP : protocols::noesy_assign
DistanceScoreMoverOP : protocols::noesy_assign
DisulfideEntropyFilterCOP : protocols::simple_filters
DisulfideEntropyFilterOP : protocols::simple_filters
DisulfJumpClaimerAP : protocols::topology_broker
DisulfJumpClaimerCAP : protocols::topology_broker
DisulfJumpClaimerCOP : protocols::topology_broker
DisulfJumpClaimerOP : protocols::topology_broker
DisulfPairingList : protocols::jumping
DisulfPairingsList : protocols::jumping
DiversifyStoredRBConfsCOP : protocols::enzdes
DiversifyStoredRBConfsOP : protocols::enzdes
DnaChainsCOP : protocols::dna
DnaChainsOP : protocols::dna
DnaDesignDefCOP : protocols::dna
DnaDesignDefOP : protocols::dna
DnaDesignDefOPs : protocols::dna
DnaDesignDefs : protocols::dna
DnaInterfaceFinderCOP : protocols::dna
DnaInterfaceFinderOP : protocols::dna
DnaInterfaceMinMoverCOP : protocols::dna
DnaInterfaceMinMoverOP : protocols::dna
DnaInterfaceMultiStateDesignCOP : protocols::dna
DnaInterfaceMultiStateDesignOP : protocols::dna
DnaInterfacePackerCOP : protocols::dna
DnaInterfacePackerOP : protocols::dna
DnaNeighbors : protocols::dna
DNAParametersCOP : protocols::dna
DNAParametersOP : protocols::dna
DnaPositions : protocols::dna
DockDesignFilterFactoryCOP : protocols::protein_interface_design
DockDesignFilterFactoryOP : protocols::protein_interface_design
DockingEnsembleCOP : protocols::docking
DockingEnsembleOP : protocols::docking
DockingEnsemblePrepackProtocolCOP : protocols::docking
DockingEnsemblePrepackProtocolOP : protocols::docking
DockingHighResCOP : protocols::docking
DockingHighResFilterCOP : protocols::docking
DockingHighResFilterOP : protocols::docking
DockingHighResLegacyCOP : protocols::docking
DockingHighResLegacyOP : protocols::docking
DockingHighResOP : protocols::docking
DockingInitialPerturbationCOP : protocols::docking
DockingInitialPerturbationOP : protocols::docking
DockingLowResCOP : protocols::docking
DockingLowResEnsembleCOP : protocols::docking
DockingLowResEnsembleOP : protocols::docking
DockingLowResFilterCOP : protocols::docking
DockingLowResFilterOP : protocols::docking
DockingLowResOP : protocols::docking
DockingPrepackProtocolCOP : protocols::docking
DockingPrepackProtocolOP : protocols::docking
DockingProtocolOP : protocols::docking
DockingSetupMoverOP : protocols::docking
DockingSlideIntoContactCOP : protocols::docking
DockingSlideIntoContactOP : protocols::docking
DockJumps : protocols::docking
DockMCMCycleCOP : protocols::docking
DockMCMCycleOP : protocols::docking
DockMCMProtocolCOP : protocols::docking
DockMCMProtocolOP : protocols::docking
DockMinMoverCOP : protocols::docking
DockMinMoverOP : protocols::docking
DockTaskFactoryCOP : protocols::docking
DockTaskFactoryOP : protocols::docking
DockWithHotspotMoverCOP : protocols::protein_interface_design::movers
DockWithHotspotMoverOP : protocols::protein_interface_design::movers
DofClaimAP : protocols::topology_broker::claims
DofClaimCAP : protocols::topology_broker::claims
DofClaimCOP : protocols::topology_broker::claims
DofClaimOP : protocols::topology_broker::claims
DofClaims : protocols::topology_broker::claims
DofUnlockCOP : protocols::environment
DofUnlockOP : protocols::environment
DomainInterfaceFilterCOP : protocols::simple_filters
DomainInterfaceFilterOP : protocols::simple_filters
DoubleDenseIGRepackerCOP : protocols::pack_daemon
DoubleDenseIGRepackerOP : protocols::pack_daemon
DoubleLayerKinematicAbinitioCOP : protocols::abinitio
DoubleLayerKinematicAbinitioOP : protocols::abinitio
DownstreamAlgorithmCOP : protocols::match::downstream
DownstreamAlgorithmOP : protocols::match::downstream
DownstreamBuilderCOP : protocols::match::downstream
DownstreamBuilderOP : protocols::match::downstream
DownstreamCoordinateKinemageWriterCOP : protocols::match::output
DownstreamCoordinateKinemageWriterOP : protocols::match::output
DownstreamRMSEvaluatorCOP : protocols::match::output
DownstreamRMSEvaluatorOP : protocols::match::output
DsspMoverOP : protocols::moves
DualMonteCarloCOP : protocols::moves
DualMonteCarloOP : protocols::moves
DummyClassAP : protocols::toolbox
DummyClassCAP : protocols::toolbox
DummyClassCOP : protocols::toolbox
DummyClassOP : protocols::toolbox
DunbrackSCSamplerCOP : protocols::match::upstream
DunbrackSCSamplerOP : protocols::match::upstream
DynamicAggregateFunctionCOP : protocols::pack_daemon
DynamicAggregateFunctionDriverCOP : protocols::pack_daemon
DynamicAggregateFunctionDriverOP : protocols::pack_daemon
DynamicAggregateFunctionOP : protocols::pack_daemon