- p -

• PackDaemonCOP : protocols::pack_daemon
• PackDaemonOP : protocols::pack_daemon
• PackerEnergy : protocols::flexpack
• PackerNeighborGraphFilterCOP : protocols::simple_filters
• PackerNeighborGraphFilterOP : protocols::simple_filters
• PackingStateCOP : protocols::multistate_design
• PackingStateOP : protocols::multistate_design
• PackRotamersMoverCOP : protocols::simple_moves
• PackRotamersMoverLazyCOP : protocols::simple_moves
• PackRotamersMoverLazyOP : protocols::simple_moves
• PackRotamersMoverOP : protocols::simple_moves
• PackStatFilterCOP : protocols::simple_filters
• PackStatFilterOP : protocols::simple_filters
• PackStatMoverOP : protocols::analysis
• PairFeaturesCOP : protocols::features
• PairFeaturesOP : protocols::features
• PairingLibraryCOP : protocols::jumping
• PairingLibraryOP : protocols::jumping
• PairingStatisticsCOP : protocols::abinitio
• PairingStatisticsOP : protocols::abinitio
• PairMap : protocols::features::helixAssembly
• ParallelBetaPairingPreferenceFilterCOP : protocols::fldsgn::filters
• ParallelBetaPairingPreferenceFilterOP : protocols::fldsgn::filters
• ParetoOptMutationMoverCOP : protocols::design_opt
• ParetoOptMutationMoverOP : protocols::design_opt
• ParsedProtocolCOP : protocols::rosetta_scripts
• ParsedProtocolOP : protocols::rosetta_scripts
• ParserCOP : protocols::jd2
• ParserOP : protocols::jd2
• PatchdockJobInputterCOP : protocols::protein_interface_design
• PatchdockJobInputterOP : protocols::protein_interface_design
• PatchdockReaderCOP : protocols::protein_interface_design
• PatchdockReaderOP : protocols::protein_interface_design
• PatchdockTransformCOP : protocols::protein_interface_design::movers
• PatchdockTransformOP : protocols::protein_interface_design::movers
• PCA_OP : protocols::evaluation
• PCS_data_Ts1OP : protocols::scoring::methods::pcsTs1
• PCS_data_Ts2OP : protocols::scoring::methods::pcsTs2
• PCS_data_Ts3OP : protocols::scoring::methods::pcsTs3
• PCS_data_Ts4OP : protocols::scoring::methods::pcsTs4
• PCS_dataOP : protocols::scoring::methods::pcs
• PCS_Energy_Ts1COP : protocols::scoring::methods::pcsTs1
• PCS_Energy_Ts1OP : protocols::scoring::methods::pcsTs1
• PCS_Energy_Ts2COP : protocols::scoring::methods::pcsTs2
• PCS_Energy_Ts2OP : protocols::scoring::methods::pcsTs2
• PCS_Energy_Ts3COP : protocols::scoring::methods::pcsTs3
• PCS_Energy_Ts3OP : protocols::scoring::methods::pcsTs3
• PCS_Energy_Ts4COP : protocols::scoring::methods::pcsTs4
• PCS_Energy_Ts4OP : protocols::scoring::methods::pcsTs4
• PCS_EnergyCOP : protocols::scoring::methods::pcs
• PCS_EnergyOP : protocols::scoring::methods::pcs
• PcsDataCenterCOP : protocols::scoring::methods::pcs2
• PcsDataCenterManagerOP : protocols::scoring::methods::pcs2
• PcsDataCenterOP : protocols::scoring::methods::pcs2
• PcsEnergyControllerAP : protocols::topology_broker
• PcsEnergyControllerCAP : protocols::topology_broker
• PcsEnergyControllerCOP : protocols::topology_broker
• PcsEnergyControllerOP : protocols::topology_broker
• PcsEnergyCOP : protocols::scoring::methods::pcs2
• PcsEnergyOP : protocols::scoring::methods::pcs2
• PcsInputCenterCOP : protocols::scoring::methods::pcs2
• PcsInputCenterOP : protocols::scoring::methods::pcs2
• PDB_Entry : protocols::sparta
• PdbDataFeaturesOP : protocols::features
• PDBDumpMoverCOP : protocols::moves
• PDBDumpMoverOP : protocols::moves
• PdbIdChunkFilterCOP : protocols::frag_picker
• PdbIdChunkFilterOP : protocols::frag_picker
• PDBInputterSP : protocols::inputter
• PDBJobInputterOP : protocols::jd2
• PDBJobOutputterOP : protocols::jd2
• PDBLandmarkCOP : protocols::antibody
• PDBLandmarkOP : protocols::antibody
• PdbLoggerCOP : protocols::loop_modeling::loggers
• PdbLoggerOP : protocols::loop_modeling::loggers
• PDBMap : protocols::antibody::design
• PDBOutputCOP : protocols::dna
• PDBOutputOP : protocols::dna
• PDBOutputterSP : protocols::outputter
• PDBReloadMoverCOP : protocols::simple_moves
• PDBReloadMoverOP : protocols::simple_moves
• PDBWriterCOP : protocols::match::output
• PDBWriterOP : protocols::match::output
• PDDFEnergyCOP : protocols::scoring::methods::saxs
• PDDFEnergyOP : protocols::scoring::methods::saxs
• PDDFScoreFilterCOP : protocols::simple_filters
• PDDFScoreFilterOP : protocols::simple_filters
• PeakAssignmentAP : protocols::noesy_assign
• PeakAssignmentCAP : protocols::noesy_assign
• PeakAssignmentCOP : protocols::noesy_assign
• PeakAssignmentOP : protocols::noesy_assign
• PeakAssignmentResidueMapAP : protocols::noesy_assign
• PeakAssignmentResidueMapCAP : protocols::noesy_assign
• PeakAssignmentResidueMapCOP : protocols::noesy_assign
• PeakAssignmentResidueMapOP : protocols::noesy_assign
• PeakAssignments : protocols::noesy_assign
• PeakCalibratorAP : protocols::noesy_assign
• PeakCalibratorCAP : protocols::noesy_assign
• PeakCalibratorCOP : protocols::noesy_assign
• PeakCalibratorOP : protocols::noesy_assign
• PeakFileFormatCOP : protocols::noesy_assign
• PeakFileFormatOP : protocols::noesy_assign
• PeptideStapleMoverCOP : protocols::simple_moves
• PeptideStapleMoverOP : protocols::simple_moves
• PeriodicMoverCOP : protocols::loop_modeling::utilities
• PeriodicMoverOP : protocols::loop_modeling::utilities
• PerNativeRRReporterHumanCOP : protocols::rotamer_recovery
• PerNativeRRReporterHumanOP : protocols::rotamer_recovery
• PerResidueAAProbSet : protocols::antibody::design
• PerturbChiSidechainMoverCOP : protocols::simple_moves::sidechain_moves
• PerturbChiSidechainMoverOP : protocols::simple_moves::sidechain_moves
• PerturberCOP : protocols::kinematic_closure::perturbers
• PerturberOP : protocols::kinematic_closure::perturbers
• PerturberSetCOP : protocols::kinematic_closure::perturbers
• PerturberSetOP : protocols::kinematic_closure::perturbers
• PerturbRotamerSidechainMoverCOP : protocols::simple_moves::sidechain_moves
• PerturbRotamerSidechainMoverOP : protocols::simple_moves::sidechain_moves
• PHIPSI_ERR_SURF : protocols::sparta
• PhosphateMoveCOP : protocols::stepwise::sampling::rna::phosphate
• PhosphateMoveOP : protocols::stepwise::sampling::rna::phosphate
• PhosphateMoverCOP : protocols::stepwise::sampling::rna::phosphate
• PhosphateMoverOP : protocols::stepwise::sampling::rna::phosphate
• PhosphateScreenerCOP : protocols::stepwise::screener
• PhosphateScreenerOP : protocols::stepwise::screener
• PivotBasedKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• PivotBasedKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• PivotPickerCOP : protocols::kinematic_closure::pivot_pickers
• PivotPickerOP : protocols::kinematic_closure::pivot_pickers
• PlacementAuctionMoverCOP : protocols::protein_interface_design::movers
• PlacementAuctionMoverOP : protocols::protein_interface_design::movers
• PlacementMinimizationMoverCOP : protocols::protein_interface_design::movers
• PlacementMinimizationMoverOP : protocols::protein_interface_design::movers
• PlaceOnLoopCOP : protocols::protein_interface_design::movers
• PlaceOnLoopOP : protocols::protein_interface_design::movers
• PlaceStubMoverCOP : protocols::protein_interface_design::movers
• PlaceStubMoverOP : protocols::protein_interface_design::movers
• PlaceSurfaceProbeCOP : protocols::hotspot_hashing::movers
• PlaceSurfaceProbeOP : protocols::hotspot_hashing::movers
• PlaidFingerprintCOP : protocols::pockets
• PlaidFingerprintOP : protocols::pockets
• PlainSilentFileJobDistributorOP : protocols::jobdist
• PNatAAOptEPositionDataOP : protocols::optimize_weights
• PNatAAOptERotamerDataOP : protocols::optimize_weights
• PNatAAOptERotamerDataOPs : protocols::optimize_weights
• PNatLigPoseOptEDataCOP : protocols::optimize_weights
• PNatLigPoseOptEDataOP : protocols::optimize_weights
• PNatRotOptEPositionDataOP : protocols::optimize_weights
• PNatRotOptERotamerDataOP : protocols::optimize_weights
• PNatRotOptERotamerDataOPs : protocols::optimize_weights
• PNatStructureOptEDataOP : protocols::optimize_weights
• PocketConstraintOP : protocols::pockets
• PocketGridCOP : protocols::pockets
• PocketGridOP : protocols::pockets
• PointList : protocols::jumping
• PointMutationCalculatorCOP : protocols::design_opt
• PointMutationCalculatorOP : protocols::design_opt
• PolicyCOP : protocols::nonlocal
• PolicyOP : protocols::nonlocal
• Pool_RMSD_OP : protocols::canonical_sampling::mc_convergence_checks
• PoolDataCOP : protocols::canonical_sampling::mc_convergence_checks
• PoolDataOP : protocols::canonical_sampling::mc_convergence_checks
• Pose : protocols::filters , protocols::fldsgn::potentials::sspot , protocols::flxbb , protocols::protein_interface_design::movers , protocols::rosetta_scripts , protocols::sic_dock , protocols::sic_dock::scores
• PoseCommentCOP : protocols::simple_filters
• PoseCommentOP : protocols::simple_filters
• PoseCommentsFeaturesCOP : protocols::features
• PoseCommentsFeaturesOP : protocols::features
• PoseConditionCOP : protocols::moves
• PoseConditionOP : protocols::moves
• PoseConformationFeaturesCOP : protocols::features
• PoseConformationFeaturesOP : protocols::features
• PoseEvaluatorCOP : protocols::evaluation
• PoseEvaluatorOP : protocols::evaluation
• PoseEvaluators : protocols::evaluation
• PoseEvaluatorsCOP : protocols::evaluation
• PoseEvaluatorsOP : protocols::evaluation
• PoseFoundResiduesCombinationOP : protocols::enzdes
• PoseInputStreamJobInputterOP : protocols::jd2
• PoseInserterCOP : protocols::match::output
• PoseInserterOP : protocols::match::output
• PoseList : protocols::stepwise
• PoseMatchOutputWriterCOP : protocols::match::output
• PoseMatchOutputWriterOP : protocols::match::output
• PosePropertyReporterCOP : protocols::rosetta_scripts
• PosePropertyReporterCreatorCOP : protocols::rosetta_scripts
• PosePropertyReporterCreatorOP : protocols::rosetta_scripts
• PosePropertyReporterFactoryCOP : protocols::rosetta_scripts
• PosePropertyReporterFactoryOP : protocols::rosetta_scripts
• PosePropertyReporterOP : protocols::rosetta_scripts
• PoseSelectionScreenerCOP : protocols::stepwise::screener
• PoseSelectionScreenerOP : protocols::stepwise::screener
• PoseSelectorCOP : protocols::rosetta_scripts
• PoseSelectorCreatorCOP : protocols::rosetta_scripts
• PoseSelectorCreatorOP : protocols::rosetta_scripts
• PoseSelectorFactoryCOP : protocols::rosetta_scripts
• PoseSelectorFactoryOP : protocols::rosetta_scripts
• PoseSelectorOP : protocols::rosetta_scripts
• PoseWithScore : protocols::abinitio
• Positions : protocols::dna
• PositionSpecificRandomizerCOP : protocols::genetic_algorithm
• PositionSpecificRandomizerOP : protocols::genetic_algorithm
• PositionTypes : protocols::dna
• PosPair : protocols::frag_picker::nonlocal , protocols::frag_picker
• PostDockAssemblyScorerCOP : protocols::domain_assembly
• PostDockAssemblyScorerOP : protocols::domain_assembly
• PosTypeCOP : protocols::multistate_design
• PosTypeOP : protocols::multistate_design
• PowExpressionCOP : protocols::pack_daemon
• PowExpressionOP : protocols::pack_daemon
• PrecomputedFlexbbInteractionGraphCOP : protocols::flexpack::interaction_graph
• PrecomputedFlexbbInteractionGraphOP : protocols::flexpack::interaction_graph
• PredesignPerturbMoverOP : protocols::enzdes
• PreventChainFromRepackingOperationCOP : protocols::toolbox::task_operations
• PreventChainFromRepackingOperationOP : protocols::toolbox::task_operations
• PreventResiduesFromRepackingOperationCOP : protocols::toolbox::task_operations
• PreventResiduesFromRepackingOperationOP : protocols::toolbox::task_operations
• Probabilities : protocols::medal , protocols::nonlocal , protocols::star
• ProcessorFactoryCOP : protocols::match::output
• ProcessorFactoryOP : protocols::match::output
• ProfilerMoverCOP : protocols::moves
• ProfilerMoverOP : protocols::moves
• ProfileScoreCOP : protocols::frag_picker::scores
• ProfileScoreL1COP : protocols::frag_picker::scores
• ProfileScoreL1OP : protocols::frag_picker::scores
• ProfileScoreOP : protocols::frag_picker::scores
• ProgressBarCOP : protocols::loop_modeling::loggers
• ProgressBarObserverCOP : protocols::canonical_sampling
• ProgressBarObserverOP : protocols::canonical_sampling
• ProgressBarOP : protocols::loop_modeling::loggers
• ProlineFixMoverCOP : protocols::simple_moves
• ProlineFixMoverOP : protocols::simple_moves
• ProtectedConformationAP : protocols::environment
• ProtectedConformationCAP : protocols::environment
• ProtectedConformationCOP : protocols::environment
• ProtectedConformationOP : protocols::environment
• ProteinAtrRepCheckerCOP : protocols::stepwise::sampling::protein::checker
• ProteinAtrRepCheckerOP : protocols::stepwise::sampling::protein::checker
• ProteinAtrRepScreenerCOP : protocols::stepwise::screener
• ProteinAtrRepScreenerOP : protocols::stepwise::screener
• ProteinBackboneAtomAtomPairFeaturesCOP : protocols::features
• ProteinBackboneAtomAtomPairFeaturesOP : protocols::features
• ProteinBackboneBuildPointCOP : protocols::match::upstream
• ProteinBackboneBuildPointOP : protocols::match::upstream
• ProteinBackboneTorsionAngleFeaturesCOP : protocols::features
• ProteinBackboneTorsionAngleFeaturesOP : protocols::features
• ProteinBetaAntiParallelRotamerCOP : protocols::rotamer_sampler::protein
• ProteinBetaAntiParallelRotamerOP : protocols::rotamer_sampler::protein
• ProteinBondGeometryFeaturesCOP : protocols::features
• ProteinBondGeometryFeaturesOP : protocols::features
• ProteinFragmentRotamerCOP : protocols::rotamer_sampler::protein
• ProteinFragmentRotamerOP : protocols::rotamer_sampler::protein
• ProteinInterfaceDesignOperationCOP : protocols::toolbox::task_operations
• ProteinInterfaceDesignOperationOP : protocols::toolbox::task_operations
• ProteinInterfaceMultiStateDesignMoverCOP : protocols::dna
• ProteinInterfaceMultiStateDesignMoverOP : protocols::dna
• ProteinLigandInterfaceUpweighterCOP : protocols::enzdes
• ProteinLigandInterfaceUpweighterOP : protocols::enzdes
• ProteinMainChainRotamerCOP : protocols::rotamer_sampler::protein
• ProteinMainChainRotamerOP : protocols::rotamer_sampler::protein
• ProteinPackScreenerCOP : protocols::stepwise::screener
• ProteinPackScreenerOP : protocols::stepwise::screener
• ProteinResidueConformationFeaturesCOP : protocols::features
• ProteinResidueConformationFeaturesOP : protocols::features
• ProteinRMSDFeaturesCOP : protocols::features
• ProteinRMSDFeaturesOP : protocols::features
• ProteinRMSDNoSuperpositionFeaturesCOP : protocols::features
• ProteinRMSDNoSuperpositionFeaturesOP : protocols::features
• ProteinSCSamplerCOP : protocols::match::upstream
• ProteinSCSamplerOP : protocols::match::upstream
• ProteinSilentReportCOP : protocols::features
• ProteinSilentReportOP : protocols::features
• ProteinUpstreamBuilderCOP : protocols::match::upstream
• ProteinUpstreamBuilderOP : protocols::match::upstream
• ProtocolCOP : protocols::abinitio
• ProtocolFeaturesCOP : protocols::features
• ProtocolFeaturesOP : protocols::features
• ProtocolOP : protocols::abinitio
• PseudocontactShiftEnergyController_Ts1AP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts1CAP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts1COP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts1OP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts2AP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts2CAP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts2COP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts2OP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts3AP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts3CAP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts3COP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts3OP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts4AP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts4CAP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts4COP : protocols::topology_broker
• PseudocontactShiftEnergyController_Ts4OP : protocols::topology_broker
• PseudocontactShiftEnergyControllerAP : protocols::topology_broker
• PseudocontactShiftEnergyControllerCAP : protocols::topology_broker
• PseudocontactShiftEnergyControllerCOP : protocols::topology_broker
• PseudocontactShiftEnergyControllerOP : protocols::topology_broker
• PSSM2BfactorMoverCOP : protocols::simple_moves
• PSSM2BfactorMoverOP : protocols::simple_moves
• PSSMOptEPositionDataOP : protocols::optimize_weights
• PyMolMoverCOP : protocols::moves
• PyMolMoverOP : protocols::moves
• PyMolObserverCOP : protocols::moves
• PyMolObserverOP : protocols::moves