- s -

• SaltBridgeFeaturesCOP : protocols::features
• SaltBridgeFeaturesOP : protocols::features
• SameChiBinComboGrouperCOP : protocols::match::output
• SameChiBinComboGrouperOP : protocols::match::output
• SameRotamerComboGrouperCOP : protocols::match::output
• SameRotamerComboGrouperOP : protocols::match::output
• SameSequenceAndDSPositionGrouperCOP : protocols::match::output
• SameSequenceAndDSPositionGrouperOP : protocols::match::output
• SameSequenceGrouperCOP : protocols::match::output
• SameSequenceGrouperOP : protocols::match::output
• SameStrandCOP : protocols::jumping
• SameStrandOP : protocols::jumping
• SampleApplierCOP : protocols::stepwise::screener
• SampleApplierOP : protocols::stepwise::screener
• SandwichFeaturesCOP : protocols::features::strand_assembly
• SandwichFeaturesOP : protocols::features::strand_assembly
• SaneDockingProtocolOP : protocols::docking::stateless
• SaneMinMoverCOP : protocols::simple_moves
• SaneMinMoverOP : protocols::simple_moves
• SaveAndRetrieveSidechainsCOP : protocols::protein_interface_design::movers
• SaveAndRetrieveSidechainsOP : protocols::protein_interface_design::movers
• SavePoseMoverCOP : protocols::rosetta_scripts
• SavePoseMoverOP : protocols::rosetta_scripts
• SAXSScoreFilterCOP : protocols::simple_filters
• SAXSScoreFilterOP : protocols::simple_filters
• ScaffoldBuildPointCOP : protocols::match::upstream
• ScaffoldBuildPointOP : protocols::match::upstream
• ScoreCutoffFilterCOP : protocols::simple_filters
• ScoreCutoffFilterOP : protocols::simple_filters
• ScoredCandidate : protocols::frag_picker
• ScoredCandidatesVector1 : protocols::frag_picker
• ScoreFunctionFeaturesCOP : protocols::features
• ScoreFunctionFeaturesOP : protocols::features
• ScoreList : protocols::nonlocal , protocols::simple_moves
• ScoreMap : protocols::qsar::scoring_grid
• ScoreMoverCOP : protocols::simple_moves
• ScoreMoverOP : protocols::simple_moves
• ScoreNormalizationCOP : protocols::qsar::scoring_grid
• ScoreNormalizationOP : protocols::qsar::scoring_grid
• Scores : protocols::sic_dock , protocols::sic_dock::scores
• ScoreToRmsdMap : protocols::loop_modeling::loggers
• ScoreTypeFeaturesCOP : protocols::features
• ScoreTypeFeaturesOP : protocols::features
• ScoreVsRmsdCOP : protocols::loop_modeling::loggers
• ScoreVsRmsdOP : protocols::loop_modeling::loggers
• ScoringGridLoaderCOP : protocols::qsar::scoring_grid
• ScoringGridLoaderOP : protocols::qsar::scoring_grid
• ScoringSecMatchRPECOP : protocols::match::downstream
• ScoringSecMatchRPEOP : protocols::match::downstream
• ScreeningFeaturesCOP : protocols::features
• ScreeningFeaturesOP : protocols::features
• ScreeningJobInputterOP : protocols::jd2
• SearchPatternCOP : protocols::hotspot_hashing
• SearchPatternOP : protocols::hotspot_hashing
• SearchPatternRotSetOpCOP : protocols::hotspot_hashing
• SearchPatternRotSetOpOP : protocols::hotspot_hashing
• SecMatchResiduePairEvaluatorCOP : protocols::match::downstream
• SecMatchResiduePairEvaluatorOP : protocols::match::downstream
• SecondaryMatcherToDownstreamResidueCOP : protocols::match::downstream
• SecondaryMatcherToDownstreamResidueOP : protocols::match::downstream
• SecondaryMatcherToUpstreamResidueCOP : protocols::match::downstream
• SecondaryMatcherToUpstreamResidueOP : protocols::match::downstream
• SecondaryMatchProtocolCAP : protocols::enzdes
• SecondaryMatchProtocolCOP : protocols::enzdes
• SecondaryMatchProtocolOP : protocols::enzdes
• SecondaryMatchUpstreamResProcessorCOP : protocols::match::downstream
• SecondaryMatchUpstreamResProcessorOP : protocols::match::downstream
• SecondarySimilarityCOP : protocols::frag_picker::scores
• SecondarySimilarityOP : protocols::frag_picker::scores
• SecondaryStructureCountFilterCOP : protocols::fldsgn::filters
• SecondaryStructureCountFilterOP : protocols::fldsgn::filters
• SecondaryStructureFilterCOP : protocols::fldsgn::filters
• SecondaryStructureFilterOP : protocols::fldsgn::filters
• SecondaryStructurePoolCOP : protocols::frag_picker::quota
• SecondaryStructurePoolOP : protocols::frag_picker::quota
• SeedFoldTreeCOP : protocols::seeded_abinitio
• SeedFoldTreeOP : protocols::seeded_abinitio
• SegmentInsertAP : protocols::forge::build
• SegmentInsertCAP : protocols::forge::build
• SegmentInsertCOP : protocols::forge::build
• SegmentInsertOP : protocols::forge::build
• SegmentRebuildAP : protocols::forge::build
• SegmentRebuildCAP : protocols::forge::build
• SegmentRebuildCOP : protocols::forge::build
• SegmentRebuildOP : protocols::forge::build
• SegmentSwapAP : protocols::forge::build
• SegmentSwapCAP : protocols::forge::build
• SegmentSwapCOP : protocols::forge::build
• SegmentSwapOP : protocols::forge::build
• SelectByDensityFitOperationCOP : protocols::toolbox::task_operations
• SelectByDensityFitOperationOP : protocols::toolbox::task_operations
• SelectBySASAOperationCOP : protocols::toolbox::task_operations
• SelectBySASAOperationOP : protocols::toolbox::task_operations
• SelectRDC_EvaluatorCOP : protocols::simple_filters
• SelectRDC_EvaluatorOP : protocols::simple_filters
• SelectResiduesByLayerOP : protocols::toolbox
• SelectResiduesWithinChainOperationCOP : protocols::toolbox::task_operations
• SelectResiduesWithinChainOperationOP : protocols::toolbox::task_operations
• SeparateDnaFromNonDnaCOP : protocols::dna
• SeparateDnaFromNonDnaOP : protocols::dna
• SeqprofConsensusOperationOP : protocols::toolbox::task_operations
• SequenceClaimAP : protocols::topology_broker::claims
• SequenceClaimCAP : protocols::topology_broker::claims
• SequenceClaimCOP : protocols::topology_broker::claims
• SequenceClaimerAP : protocols::topology_broker
• SequenceClaimerCAP : protocols::topology_broker
• SequenceClaimerCOP : protocols::topology_broker
• SequenceClaimerOP : protocols::topology_broker
• SequenceClaimOP : protocols::topology_broker::claims
• SequenceClaims : protocols::topology_broker::claims
• SequenceCoupling1BDConstraintCOP : protocols::constraints_additional
• SequenceCoupling1BDConstraintOP : protocols::constraints_additional
• SequenceCouplingConstraintCOP : protocols::constraints_additional
• SequenceCouplingConstraintOP : protocols::constraints_additional
• SequenceMoverCOP : protocols::moves
• SequenceMoverOP : protocols::moves
• SequenceNumberResolverAP : protocols::topology_broker
• SequenceNumberResolverCAP : protocols::topology_broker
• SequenceNumberResolverCOP : protocols::topology_broker
• SequenceNumberResolverOP : protocols::topology_broker
• SequenceProfileMoverCOP : protocols::simple_moves
• SequenceProfileMoverOP : protocols::simple_moves
• SequenceRecoveryFilterCOP : protocols::protein_interface_design::filters
• SequenceRecoveryFilterOP : protocols::protein_interface_design::filters
• SequenceScores : protocols::dna
• SequenceSecStructPair : protocols::coarse_rna , protocols::farna
• SequentialSymmetrySliderCOP : protocols::simple_moves::symmetry
• SequentialSymmetrySliderOP : protocols::simple_moves::symmetry
• SerializableState : protocols::moves
• SerializableStateCSP : protocols::moves
• SerializableStateCWP : protocols::moves
• SerializableStateSP : protocols::moves
• SerializableStateWP : protocols::moves
• SerializedLoopList : protocols::loops
• SetAACompositionPotential_AP : protocols::fldsgn
• SetAACompositionPotential_CAP : protocols::fldsgn
• SetAACompositionPotential_COP : protocols::fldsgn
• SetAACompositionPotential_OP : protocols::fldsgn
• SetCatalyticResPackBehaviorCOP : protocols::enzdes
• SetCatalyticResPackBehaviorOP : protocols::enzdes
• SetChiMoverCOP : protocols::simple_moves::sidechain_moves
• SetChiMoverOP : protocols::simple_moves::sidechain_moves
• SetIGTypeOperationCOP : protocols::toolbox::task_operations
• SetIGTypeOperationOP : protocols::toolbox::task_operations
• SetReturningPackRotamersMoverCOP : protocols::simple_moves
• SetReturningPackRotamersMoverOP : protocols::simple_moves
• SetSecStructEnergies_AP : protocols::fldsgn::potentials
• SetSecStructEnergies_CAP : protocols::fldsgn::potentials
• SetSecStructEnergies_COP : protocols::fldsgn::potentials
• SetSecStructEnergies_OP : protocols::fldsgn::potentials
• SetTemperatureFactorCOP : protocols::protein_interface_design::movers
• SetTemperatureFactorOP : protocols::protein_interface_design::movers
• SetTorsionCOP : protocols::simple_moves
• SetTorsionOP : protocols::simple_moves
• SetupForDensityScoringMoverOP : protocols::electron_density
• SetupForFibrilMoverCOP : protocols::fibril
• SetupForFibrilMoverOP : protocols::fibril
• SetupForSymmetryMoverCOP : protocols::simple_moves::symmetry
• SetupForSymmetryMoverOP : protocols::simple_moves::symmetry
• SetupHotspotConstraintsLoopsMoverCOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsLoopsMoverOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsMoverCOP : protocols::protein_interface_design::movers
• SetupHotspotConstraintsMoverOP : protocols::protein_interface_design::movers
• SetupNCSMoverCOP : protocols::simple_moves::symmetry
• SetupNCSMoverOP : protocols::simple_moves::symmetry
• SetupPB : protocols::pb_potential
• SetupPBCreator : protocols::pb_potential
• SF_ReplicaAP : protocols::toolbox
• SF_ReplicaCAP : protocols::toolbox
• SF_ReplicaCOP : protocols::toolbox
• SF_ReplicaOP : protocols::toolbox
• ShakeStructureMoverCOP : protocols::simple_moves
• ShakeStructureMoverOP : protocols::simple_moves
• ShapeComplementarityFilterCOP : protocols::simple_filters
• ShapeComplementarityFilterOP : protocols::simple_filters
• ShearMinCCDTrialCOP : protocols::loops::loop_mover::refine
• ShearMinCCDTrialOP : protocols::loops::loop_mover::refine
• ShearMoverCOP : protocols::simple_moves
• ShearMoverOP : protocols::simple_moves
• SheetConstraintsRCGOP : protocols::fldsgn
• SheetCOP : protocols::fldsgn::topology
• SheetFoldTypes : protocols::fldsgn::topology
• SheetOP : protocols::fldsgn::topology
• Sheets : protocols::fldsgn::topology
• SheetSetCOP : protocols::fldsgn::topology
• SheetSetOP : protocols::fldsgn::topology
• SheetTopologyFilterCOP : protocols::fldsgn::filters
• SheetTopologyFilterOP : protocols::fldsgn::filters
• SheetTranslateCOP : protocols::nonlocal
• SheetTranslateOP : protocols::nonlocal
• ShortLoopClosureCOP : protocols::loops::loop_closure::ccd
• ShortLoopClosureOP : protocols::loops::loop_closure::ccd
• SICFastCOP : protocols::sic_dock
• SICFastOP : protocols::sic_dock
• SidechainContactDistCutoffCOP : protocols::frag_picker
• SidechainContactDistCutoffOP : protocols::frag_picker
• SidechainMCMoverCOP : protocols::simple_moves::sidechain_moves
• SidechainMCMoverOP : protocols::simple_moves::sidechain_moves
• SidechainMinMoverCOP : protocols::docking
• SidechainMinMoverOP : protocols::docking
• SidechainMoverBaseCOP : protocols::simple_moves::sidechain_moves
• SidechainMoverBaseOP : protocols::simple_moves::sidechain_moves
• SidechainMoverCOP : protocols::simple_moves::sidechain_moves
• SidechainMoverOP : protocols::simple_moves::sidechain_moves
• SigmoidCOP : protocols::simple_filters
• SigmoidOP : protocols::simple_filters
• SilentFileInputterSP : protocols::inputter
• SilentFileJobInputterOP : protocols::jd2
• SilentFileJobOutputterOP : protocols::jd2
• SilentFileOutputterSP : protocols::outputter
• SilentObserverOP : protocols::viewer
• SilentStructStoreCOP : protocols::wum
• SilentStructStoreOP : protocols::wum
• SilentTrajectoryRecorderOP : protocols::canonical_sampling
• SimplePoseSelectionCOP : protocols::stepwise::screener
• SimplePoseSelectionOP : protocols::stepwise::screener
• SimpleRMSD_ScreenerCOP : protocols::stepwise::screener
• SimpleRMSD_ScreenerOP : protocols::stepwise::screener
• SimpleTreeBuilderCOP : protocols::nonlocal
• SimpleTreeBuilderOP : protocols::nonlocal
• SimulatedTemperingCOP : protocols::canonical_sampling
• SimulatedTemperingObserverCOP : protocols::canonical_sampling
• SimulatedTemperingObserverOP : protocols::canonical_sampling
• SimulatedTemperingOP : protocols::canonical_sampling , protocols::moves
• SingleDownstreamResidueWriterCOP : protocols::match::output
• SingleDownstreamResidueWriterOP : protocols::match::output
• SingleFileBufferCOP : protocols::jd2
• SingleFileBufferOP : protocols::jd2
• SingleFragmentMoverCOP : protocols::nonlocal
• SingleFragmentMoverOP : protocols::nonlocal
• SingleGridCOP : protocols::qsar::scoring_grid
• SingleGridOP : protocols::qsar::scoring_grid
• SingleLoopMoverCOP : protocols::loops::loop_mover
• SingleLoopMoverOP : protocols::loops::loop_mover
• SingleMotifCOP : protocols::motifs
• SingleMotifCOPs : protocols::motifs
• SingleMotifOP : protocols::motifs
• SingleMotifOPs : protocols::motifs
• SingleNodeSP : protocols::elscripts
• SingleResidueInvrotTargetCOP : protocols::toolbox::match_enzdes_util
• SingleResidueInvrotTargetOP : protocols::toolbox::match_enzdes_util
• SingleResidueTorsionFragmentLibraryOP : protocols::frags
• SingleStateCOP : protocols::multistate_design
• SingleStateCOPs : protocols::multistate_design
• SingleStateFitnessFunctionCOP : protocols::multistate_design
• SingleStateFitnessFunctionOP : protocols::multistate_design
• SingleStateOP : protocols::multistate_design
• SingleStateOPs : protocols::multistate_design
• SingleStructureDataCOP : protocols::optimize_weights
• SingleStructureDataOP : protocols::optimize_weights
• SingleStructureDataOPs : protocols::optimize_weights
• Size : protocols::fldsgn::potentials::sspot , protocols::flxbb , protocols::hotspot_hashing , protocols::pb_potential , protocols::sic_dock::scores , protocols::sic_dock
• Size3 : protocols::match
• Size4 : protocols::match
• SizeList : protocols::abinitio , protocols::noesy_assign
• Sizes : protocols::frags , protocols::kinmatch , protocols::sic_dock::scores , protocols::sic_dock
• SlaveSP : protocols::elscripts
• SlidingWindowLoopClosureCOP : protocols::loops::loop_closure::ccd
• SlidingWindowLoopClosureOP : protocols::loops::loop_closure::ccd
• SmallFragWeightAP : protocols::topology_broker::weights
• SmallFragWeightCAP : protocols::topology_broker::weights
• SmallFragWeightCOP : protocols::topology_broker::weights
• SmallFragWeightOP : protocols::topology_broker::weights
• SmallMinCCDTrialCOP : protocols::loops::loop_mover::refine
• SmallMinCCDTrialOP : protocols::loops::loop_mover::refine
• SmallMoveKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• SmallMoveKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• SmallMoverCOP : protocols::simple_moves
• SmallMoverOP : protocols::simple_moves
• SmoothFragmentMoverCOP : protocols::simple_moves
• SmoothFragmentMoverOP : protocols::simple_moves
• SmoothFragWeightAP : protocols::topology_broker::weights
• SmoothFragWeightCAP : protocols::topology_broker::weights
• SmoothFragWeightCOP : protocols::topology_broker::weights
• SmoothFragWeightOP : protocols::topology_broker::weights
• SnugDockCOP : protocols::antibody
• SnugDockOP : protocols::antibody
• SnugDockProtocolCOP : protocols::antibody
• SnugDockProtocolOP : protocols::antibody
• SolutionList : protocols::kinematic_closure
• SolutionPickerCOP : protocols::kinematic_closure::solution_pickers
• SolutionPickerOP : protocols::kinematic_closure::solution_pickers
• SolvationGridCOP : protocols::qsar::scoring_grid
• SolvationGridOP : protocols::qsar::scoring_grid
• SourcePositionsOP : protocols::coarse_rna
• SpecialRotamerEnergyOP : protocols::scoring::methods
• SpecialRotamerRSOCOP : protocols::toolbox::rotamer_set_operations
• SpecialRotamerRSOOP : protocols::toolbox::rotamer_set_operations
• SpecificResiduesNearInterfaceFilterCOP : protocols::protein_interface_design::filters
• SpecificResiduesNearInterfaceFilterOP : protocols::protein_interface_design::filters
• SS_BaseCOP : protocols::fldsgn::topology
• SS_BaseOP : protocols::fldsgn::topology
• SS_Info2_COP : protocols::fldsgn::topology
• SS_Info2_OP : protocols::fldsgn::topology
• SS_predictorAP : protocols::ss_prediction
• SS_predictorCAP : protocols::ss_prediction
• SS_predictorCOP : protocols::ss_prediction
• SS_predictorOP : protocols::ss_prediction
• SSFeatureCOP : protocols::comparative_modeling::features
• SSFeatureOP : protocols::comparative_modeling::features
• SSPairPotentialOP : protocols::fldsgn::potentials::sspot
• StageIDs : protocols::abinitio::abscript
• StagePreparerCOP : protocols::abinitio::abscript
• StagePreparerOP : protocols::abinitio::abscript
• StandardPairingLibraryCOP : protocols::jumping
• StandardPairingLibraryOP : protocols::jumping
• StandardPivotsCOP : protocols::kinematic_closure::pivot_pickers
• StandardPivotsOP : protocols::kinematic_closure::pivot_pickers
• StarAbinitioCOP : protocols::star
• StarAbinitioOP : protocols::star
• StartFromOP : protocols::ligand_docking
• StarTreeBuilderCOP : protocols::nonlocal
• StarTreeBuilderOP : protocols::nonlocal
• StartStructClaimerAP : protocols::topology_broker
• StartStructClaimerCAP : protocols::topology_broker
• StartStructClaimerCOP : protocols::topology_broker
• StartStructClaimerOP : protocols::topology_broker
• StateAccumulatingMatchFilterCOP : protocols::match::output
• StateAccumulatingMatchFilterOP : protocols::match::output
• StatEntries : protocols::abinitio
• StatEntryList : protocols::abinitio
• StealLigandMoverCOP : protocols::comparative_modeling
• StealLigandMoverOP : protocols::comparative_modeling
• StealSideChainsMoverCOP : protocols::comparative_modeling
• StealSideChainsMoverOP : protocols::comparative_modeling
• StepWiseClustererCOP : protocols::stepwise::sampling::general
• StepWiseClustererOP : protocols::stepwise::sampling::general
• StepWiseClustererSilentBasedCOP : protocols::stepwise::sampling::general
• StepWiseClustererSilentBasedOP : protocols::stepwise::sampling::general
• StepWiseModelerCOP : protocols::stepwise::sampling
• StepWiseModelerOP : protocols::stepwise::sampling
• StepWiseMonteCarloCOP : protocols::stepwise::monte_carlo::rna
• StepWiseMonteCarloOP : protocols::stepwise::monte_carlo::rna
• StepWiseMonteCarloOptionsCOP : protocols::stepwise::monte_carlo::rna
• StepWiseMonteCarloOptionsOP : protocols::stepwise::monte_carlo::rna
• StepWisePoseAlignerCOP : protocols::stepwise::sampling::general
• StepWisePoseAlignerOP : protocols::stepwise::sampling::general
• StepWisePoseSetupCOP : protocols::stepwise::sampling::protein
• StepWisePoseSetupOP : protocols::stepwise::sampling::protein
• StepWiseProteinJobParametersCOP : protocols::stepwise::sampling::protein
• StepWiseProteinJobParametersOP : protocols::stepwise::sampling::protein
• StepWiseProteinJobParametersUtilCOP : protocols::stepwise::sampling::protein
• StepWiseProteinJobParametersUtilOP : protocols::stepwise::sampling::protein
• StepWiseProteinModelerCOP : protocols::stepwise::sampling::protein
• StepWiseProteinModelerOP : protocols::stepwise::sampling::protein
• StepWiseProteinModelerOptionsCOP : protocols::stepwise::sampling::protein
• StepWiseProteinModelerOptionsOP : protocols::stepwise::sampling::protein
• StepWiseProteinMultiPosePackerCOP : protocols::stepwise::sampling::protein
• StepWiseProteinMultiPosePackerOP : protocols::stepwise::sampling::protein
• StepWiseProteinPackerCOP : protocols::stepwise::sampling::protein
• StepWiseProteinPackerOP : protocols::stepwise::sampling::protein
• StepWiseProteinPoseMinimizerCOP : protocols::stepwise::sampling::protein
• StepWiseProteinPoseMinimizerOP : protocols::stepwise::sampling::protein
• StepWiseProteinResidueSamplerCOP : protocols::stepwise::sampling::protein
• StepWiseProteinResidueSamplerOP : protocols::stepwise::sampling::protein
• StepWiseResiduePairScreenerCOP : protocols::stepwise::screener
• StepWiseResiduePairScreenerOP : protocols::stepwise::screener
• StepWiseRNA_ClassicResidueSamplerCOP : protocols::stepwise::sampling::rna::legacy::suite
• StepWiseRNA_ClassicResidueSamplerOP : protocols::stepwise::sampling::rna::legacy::suite
• StepWiseRNA_CombineLongLoopFiltererOP : protocols::stepwise::sampling::rna
• StepWiseRNA_CombineLongLoopFiltererpCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_ConnectionSamplerCOP : protocols::stepwise::sampling::rna::connection
• StepWiseRNA_ConnectionSamplerOP : protocols::stepwise::sampling::rna::connection
• StepWiseRNA_FloatingBaseSamplerCOP : protocols::stepwise::sampling::rna::legacy::rigid_body
• StepWiseRNA_FloatingBaseSamplerOP : protocols::stepwise::sampling::rna::legacy::rigid_body
• StepWiseRNA_JobParametersCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_JobParametersOP : protocols::stepwise::sampling::rna
• StepWiseRNA_JobParametersUtilCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_JobParametersUtilOP : protocols::stepwise::sampling::rna
• StepWiseRNA_MinimizerCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_MinimizerOP : protocols::stepwise::sampling::rna
• StepWiseRNA_ModelerCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_ModelerOP : protocols::stepwise::sampling::rna
• StepWiseRNA_ModelerOptionsCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_ModelerOptionsOP : protocols::stepwise::sampling::rna
• StepWiseRNA_PoseSelectionCOP : protocols::stepwise::sampling::rna
• StepWiseRNA_PoseSelectionOP : protocols::stepwise::sampling::rna
• StepWiseRNA_PoseSetupCOP : protocols::stepwise::sampling::rna::legacy
• StepWiseRNA_PoseSetupOP : protocols::stepwise::sampling::rna::legacy
• StepWiseRNA_RigidBodySamplerCOP : protocols::stepwise::sampling::rna::legacy::rigid_body
• StepWiseRNA_RigidBodySamplerOP : protocols::stepwise::sampling::rna::legacy::rigid_body
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorCOP : protocols::stepwise::sampling::rna::sugar
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorOLDCOP : protocols::stepwise::sampling::rna::sugar::legacy
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorOLDOP : protocols::stepwise::sampling::rna::sugar::legacy
• StepWiseRNA_VirtualSugarJustInTimeInstantiatorOP : protocols::stepwise::sampling::rna::sugar
• StepWiseRNA_VirtualSugarSamplerFromStringListCOP : protocols::stepwise::sampling::rna::sugar
• StepWiseRNA_VirtualSugarSamplerFromStringListOP : protocols::stepwise::sampling::rna::sugar
• StepWiseRNA_VirtualSugarUtilCOP : protocols::stepwise::sampling::rna::sugar
• StepWiseRNA_VirtualSugarUtilOP : protocols::stepwise::sampling::rna::sugar
• StepWiseSampleAndScreenCOP : protocols::stepwise
• StepWiseSampleAndScreenOP : protocols::stepwise
• StepWiseScreenerCOP : protocols::stepwise::screener
• StepWiseScreenerOP : protocols::stepwise::screener
• StepWiseScreenerUtilCOP : protocols::stepwise::screener
• StepWiseScreenerUtilOP : protocols::stepwise::screener
• StrandBundleFeaturesCOP : protocols::features::strand_assembly
• StrandBundleFeaturesOP : protocols::features::strand_assembly
• StrandCOP : protocols::fldsgn::topology
• StrandOP : protocols::fldsgn::topology
• StrandPairingCOP : protocols::fldsgn::topology
• StrandPairingOP : protocols::fldsgn::topology
• StrandPairings : protocols::fldsgn::topology
• StrandPairingSetCOP : protocols::fldsgn::topology
• StrandPairingSetOP : protocols::fldsgn::topology
• Strands : protocols::fldsgn::topology
• String : protocols::flxbb
• StringFilter_pair : protocols::filters
• StringList : protocols::sparta
• Strings : protocols::dna , protocols::optimize_weights
• StructuralSimilarityEvaluatorCOP : protocols::simple_filters
• StructuralSimilarityEvaluatorOP : protocols::simple_filters
• StructureFeaturesCOP : protocols::features
• StructureFeaturesOP : protocols::features
• StructureID : protocols::features
• StructureRestrictorCOP : protocols::moves
• StructureRestrictorOP : protocols::moves
• StructureScoresFeaturesCOP : protocols::features
• StructureScoresFeaturesOP : protocols::features
• StubApplierCOP : protocols::stepwise::screener
• StubApplierOP : protocols::stepwise::screener
• StubDistanceScreenerCOP : protocols::stepwise::screener
• StubDistanceScreenerOP : protocols::stepwise::screener
• StubScoreFilterCOP : protocols::protein_interface_design::filters
• StubScoreFilterOP : protocols::protein_interface_design::filters
• StubScoreLoopsFilterCOP : protocols::protein_interface_design::filters
• StubScoreLoopsFilterOP : protocols::protein_interface_design::filters
• SubroutineMoverCOP : protocols::protein_interface_design::movers
• SubroutineMoverOP : protocols::protein_interface_design::movers
• SugarInstantiateMoverCOP : protocols::stepwise::sampling::rna::sugar
• SugarInstantiateMoverOP : protocols::stepwise::sampling::rna::sugar
• SugarInstantiatorCOP : protocols::stepwise::screener
• SugarInstantiatorOP : protocols::stepwise::screener
• SugarModelingCOP : protocols::stepwise::sampling::rna::sugar
• SugarModelingOP : protocols::stepwise::sampling::rna::sugar
• SugarVirtualizeMoverCOP : protocols::stepwise::sampling::rna::sugar
• SugarVirtualizeMoverOP : protocols::stepwise::sampling::rna::sugar
• SuperimposeMoverCOP : protocols::simple_moves
• SuperimposeMoverOP : protocols::simple_moves
• SurfaceDockingProtocolOP : protocols::surface_docking
• SurfaceOrientMoverOP : protocols::surface_docking
• SurfaceParametersOP : protocols::surface_docking
• SurfaceVectorFallbackConfigurationCOP : protocols::surface_docking
• SurfaceVectorFallbackConfigurationOP : protocols::surface_docking
• SurfaceVectorLoaderCOP : protocols::surface_docking
• SurfaceVectorLoaderOP : protocols::surface_docking
• SurfaceVectorOptionsCOP : protocols::surface_docking
• SurfaceVectorOptionsOP : protocols::surface_docking
• SurrogateVariableExpressionCOP : protocols::pack_daemon
• SurrogateVariableExpressionOP : protocols::pack_daemon
• SWA_MoveCOP : protocols::stepwise::monte_carlo
• SWA_MoveOP : protocols::stepwise::monte_carlo
• SWA_MoveSelectorCOP : protocols::stepwise::monte_carlo
• SWA_MoveSelectorOP : protocols::stepwise::monte_carlo
• SwitchChainOrderMoverCOP : protocols::simple_moves
• SwitchChainOrderMoverOP : protocols::simple_moves
• SwitchResidueTypeSetMoverCOP : protocols::simple_moves
• SwitchResidueTypeSetMoverOP : protocols::simple_moves
• SymDockingHiResCOP : protocols::symmetric_docking
• SymDockingHiResOP : protocols::symmetric_docking
• SymDockingInitialPerturbationCOP : protocols::simple_moves::symmetry
• SymDockingInitialPerturbationOP : protocols::simple_moves::symmetry
• SymDockingLowResCOP : protocols::symmetric_docking
• SymDockingLowResOP : protocols::symmetric_docking
• SymDockProtocolCOP : protocols::symmetric_docking
• SymDockProtocolOP : protocols::symmetric_docking
• SymEnergyCutRotamerTrialsMoverCOP : protocols::simple_moves::symmetry
• SymEnergyCutRotamerTrialsMoverOP : protocols::simple_moves::symmetry
• SymFoldandDockMoveRbJumpMoverCOP : protocols::symmetric_docking
• SymFoldandDockMoveRbJumpMoverOP : protocols::symmetric_docking
• SymFoldandDockRbTrialMoverCOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
• SymFoldandDockRbTrialMoverOP : protocols::simple_moves::symmetry , protocols::symmetric_docking
• SymFoldandDockSlideTrialMoverCOP : protocols::symmetric_docking
• SymFoldandDockSlideTrialMoverOP : protocols::symmetric_docking
• SymInterfaceSidechainMinMoverCOP : protocols::symmetric_docking
• SymInterfaceSidechainMinMoverOP : protocols::symmetric_docking
• SymmetricFragmentMoverCOP : protocols::simple_moves
• SymmetricFragmentMoverOP : protocols::simple_moves
• SymmetricRMSMoverCOP : protocols::simple_moves::symmetry
• SymmetricRMSMoverOP : protocols::simple_moves::symmetry
• SymmetryClaimAP : protocols::topology_broker::claims
• SymmetryClaimCAP : protocols::topology_broker::claims
• SymmetryClaimCOP : protocols::topology_broker::claims
• SymmetryClaimerAP : protocols::topology_broker
• SymmetryClaimerCAP : protocols::topology_broker
• SymmetryClaimerCOP : protocols::topology_broker
• SymmetryClaimerOP : protocols::topology_broker
• SymmetryClaimOP : protocols::topology_broker::claims
• SymmetryClaims : protocols::topology_broker::claims
• SymmetrySliderCOP : protocols::simple_moves::symmetry
• SymmetrySliderOP : protocols::simple_moves::symmetry
• SymMinMoverCOP : protocols::simple_moves::symmetry
• SymMinMoverOP : protocols::simple_moves::symmetry
• SymPackRotamersMoverCOP : protocols::simple_moves::symmetry
• SymPackRotamersMoverOP : protocols::simple_moves::symmetry
• SymRestrictTaskForDockingOP : protocols::symmetric_docking
• SymRotamerTrialsMoverCOP : protocols::simple_moves::symmetry
• SymRotamerTrialsMoverOP : protocols::simple_moves::symmetry
• SymShakeStructureMoverCOP : protocols::simple_moves::symmetry
• SymShakeStructureMoverOP : protocols::simple_moves::symmetry
• SymSidechainMinMoverCOP : protocols::symmetric_docking
• SymSidechainMinMoverOP : protocols::symmetric_docking