Rosetta Protocols
2014.16.56682
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tccd :
protocols::loops::loop_closure::ccd
tether_ligand_tracer :
protocols::ligand_docking
TEXT_BUFSIZE :
protocols::boinc
TR :
protocols::abinitio
,
protocols::antibody::clusters
,
protocols::antibody
tr :
protocols::boinc
TR :
protocols::canonical_sampling::mc_convergence_checks
tr :
protocols::canonical_sampling
TR :
protocols::cartesian
,
protocols::checkpoint
tr :
protocols::cluster
TR :
protocols::coarse_rna
tr :
protocols::comparative_modeling
TR :
protocols::constraints_additional
,
protocols::contact_map
,
protocols::cryst
,
protocols::design_opt
,
protocols::dna
,
protocols::electron_density
tr :
protocols::enzdes::enzutil
,
protocols::enzdes
TR :
protocols::enzdes
tr :
protocols::evaluation
,
protocols::farna
TR :
protocols::farna
,
protocols::features
tr :
protocols::features
TR :
protocols::features
tr :
protocols::features
TR :
protocols::features
,
protocols::fibril
,
protocols::filters
,
protocols::fldsgn::potentials
,
protocols::fldsgn
,
protocols::flexpack::annealer
,
protocols::flexpack::interaction_graph
,
protocols::flexpack::rotamer_set
tr :
protocols::flexpack
TR :
protocols::forge::build
,
protocols::forge::components
,
protocols::forge::methods
,
protocols::forge::remodel
,
protocols::frag_picker::nonlocal
tr :
protocols::frag_picker::scores
TR :
protocols::frag_picker
tr :
protocols::frag_picker
TR :
protocols::frags
,
protocols::genetic_algorithm
,
protocols::hotspot_hashing::movers
,
protocols::hotspot_hashing
tr :
protocols::hotspot_hashing
TR :
protocols::hybridization
,
protocols::idealize
,
protocols::inputter
,
protocols::jd2::parser
,
protocols::jd2
tr :
protocols::jd2
TR :
protocols::jd2
tr :
protocols::jd2
TR :
protocols::jd2
tr :
protocols::jobdist
TR :
protocols::jobdist
tr :
protocols::jumping
,
protocols::ligand_docking::rdf
TR :
protocols::ligand_docking
,
protocols::loop_build
,
protocols::loop_modeling::loggers
,
protocols::loophash
tr :
protocols::loops::loop_closure::ccd
TR :
protocols::loops::loop_closure::kinematic_closure
,
protocols::loops::loop_mover::perturb
,
protocols::loops::loop_mover::refine
,
protocols::loops::loops_definers
tr :
protocols::loops::loops_definers
TR :
protocols::loops
tr :
protocols::loops
TR :
protocols::match::downstream
,
protocols::match::output
,
protocols::match
tr :
protocols::match
TR :
protocols::match::upstream
,
protocols::md
,
protocols::medal
,
protocols::motif_grafting::movers
,
protocols::motif_hash
,
protocols::motifs
,
protocols::moves
tr :
protocols::moves
TR :
protocols::multistate_design
,
protocols::neighbor
tr :
protocols::noesy_assign
TR :
protocols::nonlocal
,
protocols::optimize_weights
,
protocols::outputter
,
protocols::pack_daemon
,
protocols::pb_potential
,
protocols::pmut_scan
,
protocols::pockets
,
protocols::protein_interface_design::filters
tr :
protocols::protein_interface_design::filters
TR :
protocols::protein_interface_design::filters
tr :
protocols::protein_interface_design::movers
TR :
protocols::protein_interface_design::movers
,
protocols::qsar::scoring_grid
,
protocols::qsar
tr :
protocols::rbsegment_relax
TR :
protocols::rbsegment_relax
,
protocols::relax
,
protocols::rigid
,
protocols::rosetta_scripts
,
protocols::rotamer_recovery
tr :
protocols::rotamer_recovery
TR :
protocols::rotamer_recovery
,
protocols::rotamer_sampler::rna
,
protocols::rpc
,
protocols::seeded_abinitio
,
protocols::sic_dock::scores
,
protocols::sic_dock
,
protocols::simple_filters
tr :
protocols::simple_filters
TR :
protocols::simple_filters
,
protocols::simple_moves::asym_fold_and_dock
,
protocols::simple_moves::rational_mc
,
protocols::simple_moves::sidechain_moves
,
protocols::simple_moves::symmetry
,
protocols::simple_moves
tr :
protocols::simple_moves
TR :
protocols::simple_moves
tr :
protocols::simple_moves
,
protocols::sparta
,
protocols::ss_prediction
TR :
protocols::star
,
protocols::symmetric_docking
tr :
protocols::toolbox::match_enzdes_util
TR :
protocols::toolbox::match_enzdes_util
tr :
protocols::toolbox::match_enzdes_util
TR :
protocols::toolbox::match_enzdes_util
tr :
protocols::toolbox::match_enzdes_util
TR :
protocols::toolbox::pose_manipulation
,
protocols::toolbox::pose_metric_calculators
tr :
protocols::toolbox::rotamer_set_operations
,
protocols::toolbox
TR :
protocols
,
protocols::trajectory
,
protocols::vip
,
protocols::wum2
,
protocols::wum
TR_call_order :
protocols::rosetta_scripts
TR_ccd :
protocols::seeded_abinitio
TR_cst :
protocols::protein_interface_design::movers
TR_database :
protocols::protein_interface_design::filters
TR_debug :
protocols::seeded_abinitio
TR_DI :
protocols::toolbox::pose_manipulation
TR_pcs_d :
protocols::scoring::methods::pcs
TR_PCS_d_i :
protocols::scoring::methods::pcs
TR_PCS_d_i_Ts1 :
protocols::scoring::methods::pcsTs1
TR_PCS_d_i_Ts2 :
protocols::scoring::methods::pcsTs2
TR_PCS_d_i_Ts3 :
protocols::scoring::methods::pcsTs3
TR_PCS_d_i_Ts4 :
protocols::scoring::methods::pcsTs4
TR_pcs_d_p_l :
protocols::scoring::methods::pcs
TR_pcs_d_p_l_Ts1 :
protocols::scoring::methods::pcsTs1
TR_pcs_d_p_l_Ts2 :
protocols::scoring::methods::pcsTs2
TR_pcs_d_p_l_Ts3 :
protocols::scoring::methods::pcsTs3
TR_pcs_d_p_l_Ts4 :
protocols::scoring::methods::pcsTs4
TR_pcs_d_Ts1 :
protocols::scoring::methods::pcsTs1
TR_pcs_d_Ts2 :
protocols::scoring::methods::pcsTs2
TR_pcs_d_Ts3 :
protocols::scoring::methods::pcsTs3
TR_pcs_d_Ts4 :
protocols::scoring::methods::pcsTs4
TR_PCS_Energy :
protocols::scoring::methods::pcs
TR_PCS_Energy_Ts1 :
protocols::scoring::methods::pcsTs1
TR_PCS_Energy_Ts2 :
protocols::scoring::methods::pcsTs2
TR_PCS_Energy_Ts3 :
protocols::scoring::methods::pcsTs3
TR_PCS_Energy_Ts4 :
protocols::scoring::methods::pcsTs4
TR_PcsDataCenter :
protocols::scoring::methods::pcs2
TR_PcsDataCenterManager :
protocols::scoring::methods::pcs2
TR_PcsDataCenterManagerSingleton :
protocols::scoring::methods::pcs2
TR_PcsDataLanthanide :
protocols::scoring::methods::pcs2
TR_PcsEnergy :
protocols::scoring::methods::pcs2
TR_PcsEnergyParameter :
protocols::scoring::methods::pcs2
TR_PcsEnergyParameterManager :
protocols::scoring::methods::pcs2
TR_PcsInputCenter :
protocols::scoring::methods::pcs2
TR_PcsInputCenterManager :
protocols::scoring::methods::pcs2
TR_PcsInputFile :
protocols::scoring::methods::pcs2
TR_PcsInputLine :
protocols::scoring::methods::pcs2
TR_pymol :
protocols::protein_interface_design::filters
TR_report :
protocols::protein_interface_design::movers
,
protocols::rosetta_scripts
TR_residue_scan :
protocols::protein_interface_design::filters
TR_seg :
protocols::rbsegment_relax
TR_spec :
protocols::dna
TR_TensorsOptimizer :
protocols::scoring::methods::pcs2
TR_TensorsOptimizerFix :
protocols::scoring::methods::pcs2
TR_TensorsOptimizerSvd :
protocols::scoring::methods::pcs2
TR_tsr_opt :
protocols::scoring::methods::pcs
TR_tsr_opt_Ts1 :
protocols::scoring::methods::pcsTs1
TR_tsr_opt_Ts2 :
protocols::scoring::methods::pcsTs2
TR_tsr_opt_Ts3 :
protocols::scoring::methods::pcsTs3
TR_tsr_opt_Ts4 :
protocols::scoring::methods::pcsTs4
TR_VERBOSE :
protocols::optimize_weights
trABEGO_SS_Config :
protocols::frag_picker::quota
trABEGO_SS_Pool :
protocols::frag_picker::quota
trABEGO_SS_Score :
protocols::frag_picker::scores
tracer :
protocols::frag_picker
trAdaptiveScoreHistogram :
protocols::frag_picker::scores
trAmbigCSScore :
protocols::frag_picker::scores
transform_tracer :
protocols::ligand_docking
translate_tracer :
protocols::ligand_docking
trAtomBasedConstraintsScore :
protocols::frag_picker::scores
trAtomPairConstraintsScore :
protocols::frag_picker::scores
trBestTotalScoreSelector :
protocols::frag_picker
TRBM :
protocols::rigid
trCSScore :
protocols::frag_picker::scores
trCustomScoreSelector :
protocols::frag_picker
trDihedralConstraintsScore :
protocols::frag_picker::scores
trDiversifyCrmsdByClustering :
protocols::frag_picker
trDiversifyCrmsdSelector :
protocols::frag_picker
trDiversifyDihedralsSelector :
protocols::frag_picker
trDMEScore :
protocols::frag_picker::scores
trFragmentCandidate :
protocols::frag_picker
trg_RG :
protocols::enzdes
trGunnCost :
protocols::frag_picker::scores
,
protocols::simple_moves
trGunnScore :
protocols::frag_picker::scores
trInterbondAngleScore :
protocols::frag_picker::scores
trJCoupling :
protocols::frag_picker::scores
trJCouplingIO :
protocols::frag_picker
trPartialSecondarySimilarity :
protocols::frag_picker::scores
trPdbFilter :
protocols::frag_picker
trPDDFEnergy :
protocols::scoring::methods::saxs
trPhiPsiRmsd :
protocols::frag_picker::scores
trProfScore :
protocols::frag_picker::scores
trProfScoreBlosum62 :
protocols::frag_picker::scores
trProfScoreDistWeight :
protocols::frag_picker::scores
trProfScoreL1 :
protocols::frag_picker::scores
trProfScoreSubMatrix :
protocols::frag_picker::scores
trQuotaCollector :
protocols::frag_picker::quota
trQuotaConfig :
protocols::frag_picker::quota
trQuotaSelector :
protocols::frag_picker::quota
trRDCScore :
protocols::frag_picker::scores
trRmsScore :
protocols::frag_picker::scores
trSecondarySimilarity :
protocols::frag_picker::scores
trSecondaryStructurePool :
protocols::frag_picker::quota
trTalosSSSimilarity :
protocols::frag_picker::scores
trTmScore :
protocols::frag_picker::scores
trTorsionBinPool :
protocols::frag_picker::quota
TS :
protocols::rbsegment_relax
tt :
protocols::loops
TZ :
protocols::hybridization
,
protocols::simple_moves::symmetry
Generated on Mon Apr 21 2014 16:44:07 for Rosetta Protocols by
1.8.7