basic::options::OptionKeys::pepspec Namespace Reference

Variables
BooleanOptionKey const	pepspec ("pepspec")
StringOptionKey const	soft_wts ("pepspec:soft_wts")
StringOptionKey const	cen_wts ("pepspec:cen_wts")
BooleanOptionKey const	binding_score ("pepspec:binding_score")
BooleanOptionKey const	no_cen ("pepspec:no_cen")
BooleanOptionKey const	no_cen_rottrials ("pepspec:no_cen_rottrials")
BooleanOptionKey const	run_sequential ("pepspec:run_sequential")
IntegerOptionKey const	pep_anchor ("pepspec:pep_anchor")
StringOptionKey const	pep_chain ("pepspec:pep_chain")
IntegerOptionKey const	n_peptides ("pepspec:n_peptides")
IntegerOptionKey const	n_build_loop ("pepspec:n_build_loop")
IntegerOptionKey const	n_cgrelax_loop ("pepspec:n_cgrelax_loop")
IntegerOptionKey const	n_dock_loop ("pepspec:n_dock_loop")
RealOptionKey const	interface_cutoff ("pepspec:interface_cutoff")
BooleanOptionKey const	use_input_bb ("pepspec:use_input_bb")
BooleanOptionKey const	remove_input_bb ("pepspec:remove_input_bb")
StringOptionKey const	homol_csts ("pepspec:homol_csts")
RealOptionKey const	p_homol_csts ("pepspec:p_homol_csts")
StringOptionKey const	frag_file ("pepspec:frag_file")
BooleanOptionKey const	gen_pep_bb_sequential ("pepspec:gen_pep_bb_sequential")
StringOptionKey const	input_seq ("pepspec:input_seq")
StringOptionKey const	ss_type ("pepspec:ss_type")
BooleanOptionKey const	upweight_interface ("pepspec:upweight_interface")
BooleanOptionKey const	calc_sasa ("pepspec:calc_sasa")
BooleanOptionKey const	diversify_pep_seqs ("pepspec:diversify_pep_seqs")
IntegerOptionKey const	diversify_lvl ("pepspec:diversify_lvl")
BooleanOptionKey const	dump_cg_bb ("pepspec:dump_cg_bb")
BooleanOptionKey const	save_low_pdbs ("pepspec:save_low_pdbs")
BooleanOptionKey const	save_all_pdbs ("pepspec:save_all_pdbs")
BooleanOptionKey const	no_design ("pepspec:no_design")
StringOptionKey const	pdb_list ("pepspec:pdb_list")
StringOptionKey const	ref_pdb_list ("pepspec:ref_pdb_list")
BooleanOptionKey const	add_buffer_res ("pepspec:add_buffer_res")
StringOptionKey const	cg_res_type ("pepspec:cg_res_type")
IntegerOptionKey const	native_pep_anchor ("pepspec:native_pep_anchor")
StringOptionKey const	native_pep_chain ("pepspec:native_pep_chain")
BooleanOptionKey const	native_align ("pepspec:native_align")
BooleanOptionKey const	rmsd_analysis ("pepspec:rmsd_analysis")
BooleanOptionKey const	phipsi_analysis ("pepspec:phipsi_analysis")
StringOptionKey const	anchor_type ("pepspec:anchor_type")
BooleanOptionKey const	no_prepack_prot ("pepspec:no_prepack_prot")
BooleanOptionKey const	prep_use_ref_rotamers ("pepspec:prep_use_ref_rotamers")
IntegerOptionKey const	n_prepend ("pepspec:n_prepend")
IntegerOptionKey const	n_append ("pepspec:n_append")
RealOptionKey const	clash_cutoff ("pepspec:clash_cutoff")
RealOptionKey const	n_anchor_dock_std_devs ("pepspec:n_anchor_dock_std_devs")
RealOptionKey const	prep_trans_std_dev ("pepspec:prep_trans_std_dev")
RealOptionKey const	prep_rot_std_dev ("pepspec:prep_rot_std_dev")
BooleanOptionKey const	seq_align ("pepspec:seq_align")
StringOptionKey const	prep_align_prot_to ("pepspec:prep_align_prot_to")

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::pepspec::add_buffer_res

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::anchor_type

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::binding_score

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::calc_sasa

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::cen_wts

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::cg_res_type

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::clash_cutoff

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::diversify_lvl

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::diversify_pep_seqs

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::dump_cg_bb

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::frag_file

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::gen_pep_bb_sequential

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::homol_csts

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::input_seq

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::interface_cutoff

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::n_anchor_dock_std_devs

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_append

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_build_loop

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_cgrelax_loop

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_dock_loop

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_peptides

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_prepend

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::native_align

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::native_pep_anchor

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::native_pep_chain

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen_rottrials

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_design

Referenced by add_rosetta_options_2(), and add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_prepack_prot

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::p_homol_csts

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::pdb_list

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::pepspec::pep_anchor

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::pep_chain

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::pepspec

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::phipsi_analysis

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::prep_align_prot_to

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_rot_std_dev

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_trans_std_dev

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::prep_use_ref_rotamers

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::ref_pdb_list

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::remove_input_bb

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::rmsd_analysis

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::run_sequential

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::save_all_pdbs

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::save_low_pdbs

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::seq_align

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::soft_wts

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::pepspec::ss_type

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::upweight_interface

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::pepspec::use_input_bb

Referenced by add_rosetta_options_3().