basic::options::OptionKeys::in Namespace Reference

Namespaces
	dbms
	file
	path
	rdf

Functions
BooleanOptionKey const	in ("in")
StringOptionKey const	Ntermini ("in:Ntermini")
StringOptionKey const	Ctermini ("in:Ctermini")
BooleanOptionKey const	use_truncated_termini ("in:use_truncated_termini")
BooleanOptionKey const	ignore_unrecognized_res ("in:ignore_unrecognized_res")
BooleanOptionKey const	ignore_waters ("in:ignore_waters")
BooleanOptionKey const	add_orbitals ("in:add_orbitals")
BooleanOptionKey const	show_all_fixes ("in:show_all_fixes")
BooleanOptionKey const	include_sugars ("in:include_sugars")
BooleanOptionKey const	include_lipids ("in:include_lipids")
BooleanOptionKey const	include_surfaces ("in:include_surfaces")
BooleanOptionKey const	enable_branching ("in:enable_branching")
BooleanOptionKey const	membrane ("in:membrane")
BooleanOptionKey const	remember_unrecognized_res ("in:remember_unrecognized_res")
BooleanOptionKey const	remember_unrecognized_water ("in:remember_unrecognized_water")
BooleanOptionKey const	preserve_crystinfo ("in:preserve_crystinfo")
BooleanOptionKey const	detect_oops ("in:detect_oops")
BooleanOptionKey const	detect_disulf ("in:detect_disulf")
RealOptionKey const	detect_disulf_tolerance ("in:detect_disulf_tolerance")
BooleanOptionKey const	auto_setup_metals ("in:auto_setup_metals")
RealOptionKey const	metals_detection_LJ_multiplier ("in:metals_detection_LJ_multiplier")
RealOptionKey const	metals_distance_constraint_multiplier ("in:metals_distance_constraint_multiplier")
RealOptionKey const	metals_angle_constraint_multiplier ("in:metals_angle_constraint_multiplier")
FileOptionKey const	fix_disulf ("in:fix_disulf")
BooleanOptionKey const	missing_density_to_jump ("in:missing_density_to_jump")
IntegerVectorOptionKey const	target_residues ("in:target_residues")
IntegerVectorOptionKey const	replonly_residues ("in:replonly_residues")
BooleanOptionKey const	replonly_loops ("in:replonly_loops")
BooleanOptionKey const	use_database ("in:use_database")
IntegerOptionKey const	database_protocol ("in:database_protocol")
StringVectorOptionKey const	select_structures_from_database ("in:select_structures_from_database")

Variables
BooleanOptionKey const	in
StringOptionKey const	Ntermini
StringOptionKey const	Ctermini
BooleanOptionKey const	use_truncated_termini
BooleanOptionKey const	ignore_unrecognized_res
BooleanOptionKey const	ignore_waters
BooleanOptionKey const	add_orbitals
BooleanOptionKey const	show_all_fixes
BooleanOptionKey const	include_sugars
BooleanOptionKey const	include_lipids
BooleanOptionKey const	include_surfaces
BooleanOptionKey const	enable_branching
BooleanOptionKey const	membrane
BooleanOptionKey const	remember_unrecognized_res
BooleanOptionKey const	remember_unrecognized_water
BooleanOptionKey const	preserve_crystinfo
BooleanOptionKey const	detect_oops
BooleanOptionKey const	detect_disulf
RealOptionKey const	detect_disulf_tolerance
BooleanOptionKey const	auto_setup_metals
RealOptionKey const	metals_detection_LJ_multiplier
RealOptionKey const	metals_distance_constraint_multiplier
RealOptionKey const	metals_angle_constraint_multiplier
FileOptionKey const	fix_disulf
BooleanOptionKey const	missing_density_to_jump
IntegerVectorOptionKey const	target_residues
IntegerVectorOptionKey const	replonly_residues
BooleanOptionKey const	replonly_loops
BooleanOptionKey const	use_database
IntegerOptionKey const	database_protocol
StringVectorOptionKey const	select_structures_from_database

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals

(

"in:add_orbitals"

)

BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals

(

"in:auto_setup_metals"

)

StringOptionKey const basic::options::OptionKeys::in::Ctermini

(

"in:Ctermini"

)

IntegerOptionKey const basic::options::OptionKeys::in::database_protocol

(

"in:database_protocol"

)

BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf

(

"in:detect_disulf"

)

RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance

(

"in:detect_disulf_tolerance"

)

BooleanOptionKey const basic::options::OptionKeys::in::detect_oops

(

"in:detect_oops"

)

BooleanOptionKey const basic::options::OptionKeys::in::enable_branching

(

"in:enable_branching"

)

FileOptionKey const basic::options::OptionKeys::in::fix_disulf

(

"in:fix_disulf"

)

BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res

(

"in:ignore_unrecognized_res"

)

BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters

(

"in:ignore_waters"

)

BooleanOptionKey const basic::options::OptionKeys::in::in

(

"in"

)

BooleanOptionKey const basic::options::OptionKeys::in::include_lipids

(

"in:include_lipids"

)

BooleanOptionKey const basic::options::OptionKeys::in::include_sugars

(

"in:include_sugars"

)

BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces

(

"in:include_surfaces"

)

BooleanOptionKey const basic::options::OptionKeys::in::membrane

(

"in:membrane"

)

RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier

(

"in:metals_angle_constraint_multiplier"

)

RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier

(

"in:metals_detection_LJ_multiplier"

)

RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier

(

"in:metals_distance_constraint_multiplier"

)

BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump

(

"in:missing_density_to_jump"

)

StringOptionKey const basic::options::OptionKeys::in::Ntermini

(

"in:Ntermini"

)

BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo

(

"in:preserve_crystinfo"

)

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res

(

"in:remember_unrecognized_res"

)

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water

(

"in:remember_unrecognized_water"

)

BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops

(

"in:replonly_loops"

)

IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues

(

"in:replonly_residues"

)

StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database

(

"in:select_structures_from_database"

)

BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes

(

"in:show_all_fixes"

)

IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues

(

"in:target_residues"

)

BooleanOptionKey const basic::options::OptionKeys::in::use_database

(

"in:use_database"

)

BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini

(

"in:use_truncated_termini"

)

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::in::add_orbitals("in:add_orbitals")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::auto_setup_metals("in:auto_setup_metals")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ctermini("in:Ctermini")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::in::database_protocol("in:database_protocol")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_disulf("in:detect_disulf")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::detect_disulf_tolerance("in:detect_disulf_tolerance")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::detect_oops("in:detect_oops")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::enable_branching("in:enable_branching")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::in::fix_disulf("in:fix_disulf")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_unrecognized_res("in:ignore_unrecognized_res")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::ignore_waters("in:ignore_waters")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::in("in")

Referenced by add_rosetta_options_0(), basic::ComparingTracer::ComparingTracer(), utility::tag::Tag::create(), utility::file::file_size(), utility::file::gzip(), utility::io::izstream::open(), utility::io::ozstream::open(), utility::io::izstream::open_ifstream(), numeric::read_probabilities_or_die(), basic::sampling::SphereSampler::read_sphere_data(), utility::ReadFromFileOrDie(), basic::sampling::SphereSampler::sanity_check(), Solver_NU::select_working_set(), basic::resource_manager::locator::FileSystemResourceLocator::show(), utility::file::trytry_ifstream_open(), and utility::file::trytry_ofstream_open().

BooleanOptionKey const basic::options::OptionKeys::in::include_lipids("in:include_lipids")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_sugars("in:include_sugars")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::include_surfaces("in:include_surfaces")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::membrane("in:membrane")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_angle_constraint_multiplier("in:metals_angle_constraint_multiplier")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_detection_LJ_multiplier("in:metals_detection_LJ_multiplier")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::in::metals_distance_constraint_multiplier("in:metals_distance_constraint_multiplier")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::missing_density_to_jump("in:missing_density_to_jump")

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::in::Ntermini("in:Ntermini")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::preserve_crystinfo("in:preserve_crystinfo")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_res("in:remember_unrecognized_res")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::remember_unrecognized_water("in:remember_unrecognized_water")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::replonly_loops("in:replonly_loops")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::replonly_residues("in:replonly_residues")

Referenced by add_rosetta_options_0().

StringVectorOptionKey const basic::options::OptionKeys::in::select_structures_from_database("in:select_structures_from_database")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::show_all_fixes("in:show_all_fixes")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::in::target_residues("in:target_residues")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_database("in:use_database")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::in::use_truncated_termini("in:use_truncated_termini")

Referenced by add_rosetta_options_0().