numeric::geometry::hashing::xyzStripeHashWithMeta< T > Class Template Reference

#include <xyzStripeHashWithMeta.hh>

Classes
struct	float4
struct	iter_base
struct	meta_iterator
struct	ushort2
struct	xyz_iterator
struct	xyzmeta_iterator

Public Types
typedef std::pair < numeric::xyzVector< T >, T >	VecandVal
typedef unsigned short	ushort
typedef numeric::xyzVector< T >	Vec
Public Types inherited from utility::pointer::ReferenceCount
typedef platform::Size	Size
typedef platform::Size	size_type

Public Member Functions
	xyzStripeHashWithMeta (T grid_size)
	xyzStripeHashWithMeta (T grid_size, utility::vector1< numeric::xyzVector< T > > const &atoms, utility::vector1< T > const &meta)
void	init (utility::vector1< numeric::xyzVector< T > > const &atoms, utility::vector1< T > const &meta)
virtual	~xyzStripeHashWithMeta ()
xyz_iterator	xyz_begin () const
xyz_iterator	xyz_end () const
meta_iterator	meta_begin () const
meta_iterator	meta_end () const
xyzmeta_iterator	xyzmeta_begin () const
xyzmeta_iterator	xyzmeta_end () const
bool	sanity_check () const
int	nbcount (xyzVector< T > const &v_in) const
template<typename V >
void	visit (Vec const &v_in, T const &m_in, V &visitor) const
template<typename V >
void	visit_lax (Vec const &v_in, T const &m_in, V &visitor) const
float4 const *	grid_atoms () const
ushort2 const *	grid_stripe () const
int	natom () const
int	xdim () const
int	ydim () const
int	zdim () const
float	grid_size () const
const numeric::xyzVector< T >	translation () const
Public Member Functions inherited from utility::pointer::ReferenceCount
void	ctor ()
virtual	~ReferenceCount ()
	Destructor. More...
Size	ref_count () const
	Reference count. More...

Private Member Functions
short	short_min (short const a, short const b)
short	short_max (short const a, short const b)
short	ushort_min (unsigned short const a, unsigned short const b)
short	ushort_max (unsigned short const a, unsigned short const b)
	xyzStripeHashWithMeta ()

Private Attributes
T const	grid_size_
T const	grid_size2_
int	natom_
float4 const *	grid_atoms_
ushort2 const *	grid_stripe_
int	xdim_
int	ydim_
int	zdim_
T	xmx_
T	ymx_
T	zmx_
numeric::xyzVector< T >	translation_

Additional Inherited Members
Protected Member Functions inherited from utility::pointer::ReferenceCount
	ReferenceCount ()
	Default constructor. More...
	ReferenceCount (ReferenceCount const &)
	Copy constructor. More...
ReferenceCount &	operator= (ReferenceCount const &)
	Copy assignment. More...

Member Typedef Documentation

template<typename T >

typedef unsigned short numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort

template<typename T >

typedef numeric::xyzVector<T> numeric::geometry::hashing::xyzStripeHashWithMeta< T >::Vec

template<typename T >

typedef std::pair<numeric::xyzVector<T>,T> numeric::geometry::hashing::xyzStripeHashWithMeta< T >::VecandVal

Constructor & Destructor Documentation

template<typename T >

numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzStripeHashWithMeta ( T  grid_size )

inline

template<typename T >

numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzStripeHashWithMeta ( T  grid_size, utility::vector1< numeric::xyzVector< T > > const &  atoms, utility::vector1< T > const &  meta  )

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init().

template<typename T >

virtual numeric::geometry::hashing::xyzStripeHashWithMeta< T >::~xyzStripeHashWithMeta ( )

inlinevirtual

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_.

template<typename T >

numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzStripeHashWithMeta ( )

private

Member Function Documentation

template<typename T >

float4 const* numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_.

template<typename T >

float numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_.

template<typename T >

ushort2 const* numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_.

template<typename T >

void numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init ( utility::vector1< numeric::xyzVector< T > > const &  atoms, utility::vector1< T > const &  meta  )

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_, numeric::max(), numeric::min(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_, basic::T(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_, utility_exit_with_message, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::w, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::x, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::x, numeric::xyzVector< typename >::x(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xmx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::y, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::y, numeric::xyzVector< typename >::y(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ymx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::z, numeric::xyzVector< typename >::z(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zmx_.

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzStripeHashWithMeta().

template<typename T >

meta_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::meta_begin ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_.

template<typename T >

meta_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::meta_end ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_.

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_.

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount ( xyzVector< T > const &  v_in ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size2_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_, numeric::max(), numeric::min(), basic::T(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::x, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::x, numeric::xyzVector< typename >::x(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xmx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::y, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::y, numeric::xyzVector< typename >::y(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ymx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::float4::z, numeric::xyzVector< typename >::z(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zmx_.

template<typename T >

bool numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_, utility_exit_with_message, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::x, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::y, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_.

template<typename T >

short numeric::geometry::hashing::xyzStripeHashWithMeta< T >::short_max ( short const  a, short const  b  )

inlineprivate

template<typename T >

short numeric::geometry::hashing::xyzStripeHashWithMeta< T >::short_min ( short const  a, short const  b  )

inlineprivate

template<typename T >

const numeric::xyzVector<T> numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_.

template<typename T >

short numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort_max ( unsigned short const  a, unsigned short const  b  )

inlineprivate

template<typename T >

short numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort_min ( unsigned short const  a, unsigned short const  b  )

inlineprivate

template<typename T >

template<typename V >

void numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit ( Vec const &  v_in, T const &  m_in, V &  visitor  ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size2_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_, numeric::max(), numeric::min(), basic::T(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_, numeric::statistics::w(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::x, numeric::xyzVector< typename >::x(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xmx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::y, numeric::xyzVector< typename >::y(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ymx_, numeric::xyzVector< typename >::z(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zmx_.

template<typename T >

template<typename V >

void numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax ( Vec const &  v_in, T const &  m_in, V &  visitor  ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_, numeric::max(), numeric::min(), basic::T(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_, numeric::statistics::w(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::x, numeric::xyzVector< typename >::x(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xmx_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ushort2::y, numeric::xyzVector< typename >::y(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_, numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ymx_, numeric::xyzVector< typename >::z(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zmx_.

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_.

template<typename T >

xyz_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyz_begin ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_.

template<typename T >

xyz_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyz_end ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_.

template<typename T >

xyzmeta_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzmeta_begin ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_.

template<typename T >

xyzmeta_iterator numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzmeta_end ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_, and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_.

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_.

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim ( ) const

inline

References numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_.

Member Data Documentation

template<typename T >

float4 const* numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_atoms(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::meta_begin(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::meta_end(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyz_begin(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyz_end(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzmeta_begin(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzmeta_end(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::~xyzStripeHashWithMeta().

template<typename T >

T const numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size2_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit().

template<typename T >

T const numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_size(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax().

template<typename T >

ushort2 const* numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::grid_stripe(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::~xyzStripeHashWithMeta().

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::meta_end(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::natom(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyz_end(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xyzmeta_end().

template<typename T >

numeric::xyzVector<T> numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::translation(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax().

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xdim().

template<typename T >

T numeric::geometry::hashing::xyzStripeHashWithMeta< T >::xmx_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax().

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ydim().

template<typename T >

T numeric::geometry::hashing::xyzStripeHashWithMeta< T >::ymx_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax().

template<typename T >

int numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::sanity_check(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zdim().

template<typename T >

T numeric::geometry::hashing::xyzStripeHashWithMeta< T >::zmx_

private

Referenced by numeric::geometry::hashing::xyzStripeHashWithMeta< T >::init(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::nbcount(), numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit(), and numeric::geometry::hashing::xyzStripeHashWithMeta< T >::visit_lax().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/numeric/geometry/hashing/xyzStripeHashWithMeta.fwd.hh
• symlinks/rosetta/src/numeric/geometry/hashing/xyzStripeHashWithMeta.hh