basic::options::OptionKeys::abinitio Namespace Reference

Namespaces
	star

Functions
RealOptionKey const	prob_perturb_weights ("abinitio:prob_perturb_weights")
BooleanOptionKey const	abinitio ("abinitio")
BooleanOptionKey const	membrane ("abinitio:membrane")
FileOptionKey const	kill_hairpins ("abinitio:kill_hairpins")
RealOptionKey const	kill_hairpins_frequency ("abinitio:kill_hairpins_frequency")
BooleanOptionKey const	smooth_cycles_only ("abinitio:smooth_cycles_only")
BooleanOptionKey const	relax ("abinitio:relax")
BooleanOptionKey const	final_clean_relax ("abinitio:final_clean_relax")
BooleanOptionKey const	fastrelax ("abinitio:fastrelax")
BooleanOptionKey const	multifastrelax ("abinitio:multifastrelax")
BooleanOptionKey const	debug ("abinitio:debug")
BooleanOptionKey const	clear_pose_cache ("abinitio:clear_pose_cache")
BooleanOptionKey const	explicit_pdb_debug ("abinitio:explicit_pdb_debug")
BooleanOptionKey const	use_filters ("abinitio:use_filters")
RealOptionKey const	increase_cycles ("abinitio:increase_cycles")
IntegerOptionKey const	number_3mer_frags ("abinitio:number_3mer_frags")
IntegerOptionKey const	number_9mer_frags ("abinitio:number_9mer_frags")
RealOptionKey const	temperature ("abinitio:temperature")
RealOptionKey const	rg_reweight ("abinitio:rg_reweight")
RealOptionKey const	strand_dist_cutoff ("abinitio:strand_dist_cutoff")
BooleanOptionKey const	stretch_strand_dist_cutoff ("abinitio:stretch_strand_dist_cutoff")
RealOptionKey const	rsd_wt_helix ("abinitio:rsd_wt_helix")
RealOptionKey const	rsd_wt_strand ("abinitio:rsd_wt_strand")
RealOptionKey const	rsd_wt_loop ("abinitio:rsd_wt_loop")
BooleanOptionKey const	fast ("abinitio:fast")
BooleanOptionKey const	skip_convergence_check ("abinitio:skip_convergence_check")
FileVectorOptionKey const	stage1_patch ("abinitio:stage1_patch")
FileVectorOptionKey const	stage2_patch ("abinitio:stage2_patch")
FileVectorOptionKey const	stage3a_patch ("abinitio:stage3a_patch")
FileVectorOptionKey const	stage3b_patch ("abinitio:stage3b_patch")
FileVectorOptionKey const	stage4_patch ("abinitio:stage4_patch")
FileVectorOptionKey const	stage5_patch ("abinitio:stage5_patch")
BooleanOptionKey const	exit_when_converged ("abinitio:exit_when_converged")
BooleanOptionKey const	steal_3mers ("abinitio:steal_3mers")
BooleanOptionKey const	steal_9mers ("abinitio:steal_9mers")
BooleanOptionKey const	no_write_failures ("abinitio:no_write_failures")
BooleanOptionKey const	relax_failures ("abinitio:relax_failures")
BooleanOptionKey const	relax_with_jumps ("abinitio:relax_with_jumps")
BooleanOptionKey const	process_store ("abinitio:process_store")
IntegerVectorOptionKey const	fix_residues_to_native ("abinitio:fix_residues_to_native")
BooleanOptionKey const	return_full_atom ("abinitio:return_full_atom")
BooleanOptionKey const	detect_disulfide_before_relax ("abinitio:detect_disulfide_before_relax")
BooleanOptionKey const	close_loops ("abinitio:close_loops")
BooleanOptionKey const	bGDT ("abinitio:bGDT")
BooleanOptionKey const	dump_frags ("abinitio:dump_frags")
BooleanOptionKey const	jdist_rerun ("abinitio:jdist_rerun")
RealOptionKey const	perturb ("abinitio:perturb")
BooleanOptionKey const	rerun ("abinitio:rerun")
IntegerVectorOptionKey const	rmsd_residues ("abinitio:rmsd_residues")
BooleanOptionKey const	start_native ("abinitio:start_native")
BooleanOptionKey const	debug_structures ("abinitio:debug_structures")
FileOptionKey const	log_frags ("abinitio:log_frags")
BooleanOptionKey const	only_stage1 ("abinitio:only_stage1")
RealOptionKey const	end_bias ("abinitio:end_bias")
IntegerOptionKey const	symmetry_residue ("abinitio:symmetry_residue")
RealOptionKey const	vdw_weight_stage1 ("abinitio:vdw_weight_stage1")
BooleanOptionKey const	override_vdw_all_stages ("abinitio:override_vdw_all_stages")
IntegerVectorOptionKey const	recover_low_in_stages ("abinitio:recover_low_in_stages")
IntegerVectorOptionKey const	skip_stages ("abinitio:skip_stages")
BooleanOptionKey const	close_chbrk ("abinitio:close_chbrk")
BooleanOptionKey const	include_stage5 ("abinitio:include_stage5")
BooleanOptionKey const	close_loops_by_idealizing ("abinitio:close_loops_by_idealizing")
BooleanOptionKey const	optimize_cutpoints_using_kic ("abinitio:optimize_cutpoints_using_kic")
IntegerOptionKey const	optimize_cutpoints_margin ("abinitio:optimize_cutpoints_margin")
FileOptionKey const	HD_EX_Info ("abinitio:HD_EX_Info")
RealOptionKey const	HD_penalty ("abinitio:HD_penalty")
RealOptionKey const	HD_fa_penalty ("abinitio:HD_fa_penalty")
FileOptionKey const	sheet_edge_pred ("abinitio:sheet_edge_pred")
RealOptionKey const	SEP_score_scalling ("abinitio:SEP_score_scalling")

Variables
RealOptionKey const	prob_perturb_weights
BooleanOptionKey const	abinitio
BooleanOptionKey const	membrane
FileOptionKey const	kill_hairpins
RealOptionKey const	kill_hairpins_frequency
BooleanOptionKey const	smooth_cycles_only
BooleanOptionKey const	relax
BooleanOptionKey const	final_clean_relax
BooleanOptionKey const	fastrelax
BooleanOptionKey const	multifastrelax
BooleanOptionKey const	debug
BooleanOptionKey const	clear_pose_cache
BooleanOptionKey const	explicit_pdb_debug
BooleanOptionKey const	use_filters
RealOptionKey const	increase_cycles
IntegerOptionKey const	number_3mer_frags
IntegerOptionKey const	number_9mer_frags
RealOptionKey const	temperature
RealOptionKey const	rg_reweight
RealOptionKey const	strand_dist_cutoff
BooleanOptionKey const	stretch_strand_dist_cutoff
RealOptionKey const	rsd_wt_helix
RealOptionKey const	rsd_wt_strand
RealOptionKey const	rsd_wt_loop
BooleanOptionKey const	fast
BooleanOptionKey const	skip_convergence_check
FileVectorOptionKey const	stage1_patch
FileVectorOptionKey const	stage2_patch
FileVectorOptionKey const	stage3a_patch
FileVectorOptionKey const	stage3b_patch
FileVectorOptionKey const	stage4_patch
FileVectorOptionKey const	stage5_patch
BooleanOptionKey const	exit_when_converged
BooleanOptionKey const	steal_3mers
BooleanOptionKey const	steal_9mers
BooleanOptionKey const	no_write_failures
BooleanOptionKey const	relax_failures
BooleanOptionKey const	relax_with_jumps
BooleanOptionKey const	process_store
IntegerVectorOptionKey const	fix_residues_to_native
BooleanOptionKey const	return_full_atom
BooleanOptionKey const	detect_disulfide_before_relax
BooleanOptionKey const	close_loops
BooleanOptionKey const	bGDT
BooleanOptionKey const	dump_frags
BooleanOptionKey const	jdist_rerun
RealOptionKey const	perturb
BooleanOptionKey const	rerun
IntegerVectorOptionKey const	rmsd_residues
BooleanOptionKey const	start_native
BooleanOptionKey const	debug_structures
FileOptionKey const	log_frags
BooleanOptionKey const	only_stage1
RealOptionKey const	end_bias
IntegerOptionKey const	symmetry_residue
RealOptionKey const	vdw_weight_stage1
BooleanOptionKey const	override_vdw_all_stages
IntegerVectorOptionKey const	recover_low_in_stages
IntegerVectorOptionKey const	skip_stages
BooleanOptionKey const	close_chbrk
BooleanOptionKey const	include_stage5
BooleanOptionKey const	close_loops_by_idealizing
BooleanOptionKey const	optimize_cutpoints_using_kic
IntegerOptionKey const	optimize_cutpoints_margin
FileOptionKey const	HD_EX_Info
RealOptionKey const	HD_penalty
RealOptionKey const	HD_fa_penalty
FileOptionKey const	sheet_edge_pred
RealOptionKey const	SEP_score_scalling

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::abinitio::abinitio

(

"abinitio"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::bGDT

(

"abinitio:bGDT"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::clear_pose_cache

(

"abinitio:clear_pose_cache"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_chbrk

(

"abinitio:close_chbrk"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops

(

"abinitio:close_loops"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops_by_idealizing

(

"abinitio:close_loops_by_idealizing"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug

(

"abinitio:debug"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug_structures

(

"abinitio:debug_structures"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::detect_disulfide_before_relax

(

"abinitio:detect_disulfide_before_relax"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::dump_frags

(

"abinitio:dump_frags"

)

RealOptionKey const basic::options::OptionKeys::abinitio::end_bias

(

"abinitio:end_bias"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::exit_when_converged

(

"abinitio:exit_when_converged"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::explicit_pdb_debug

(

"abinitio:explicit_pdb_debug"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::fast

(

"abinitio:fast"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::fastrelax

(

"abinitio:fastrelax"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::final_clean_relax

(

"abinitio:final_clean_relax"

)

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::fix_residues_to_native

(

"abinitio:fix_residues_to_native"

)

FileOptionKey const basic::options::OptionKeys::abinitio::HD_EX_Info

(

"abinitio:HD_EX_Info"

)

RealOptionKey const basic::options::OptionKeys::abinitio::HD_fa_penalty

(

"abinitio:HD_fa_penalty"

)

RealOptionKey const basic::options::OptionKeys::abinitio::HD_penalty

(

"abinitio:HD_penalty"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::include_stage5

(

"abinitio:include_stage5"

)

RealOptionKey const basic::options::OptionKeys::abinitio::increase_cycles

(

"abinitio:increase_cycles"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::jdist_rerun

(

"abinitio:jdist_rerun"

)

FileOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins

(

"abinitio:kill_hairpins"

)

RealOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins_frequency

(

"abinitio:kill_hairpins_frequency"

)

FileOptionKey const basic::options::OptionKeys::abinitio::log_frags

(

"abinitio:log_frags"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::membrane

(

"abinitio:membrane"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::multifastrelax

(

"abinitio:multifastrelax"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::no_write_failures

(

"abinitio:no_write_failures"

)

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_3mer_frags

(

"abinitio:number_3mer_frags"

)

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_9mer_frags

(

"abinitio:number_9mer_frags"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::only_stage1

(

"abinitio:only_stage1"

)

IntegerOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_margin

(

"abinitio:optimize_cutpoints_margin"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_using_kic

(

"abinitio:optimize_cutpoints_using_kic"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::override_vdw_all_stages

(

"abinitio:override_vdw_all_stages"

)

RealOptionKey const basic::options::OptionKeys::abinitio::perturb

(

"abinitio:perturb"

)

RealOptionKey const basic::options::OptionKeys::abinitio::prob_perturb_weights

(

"abinitio:prob_perturb_weights"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::process_store

(

"abinitio:process_store"

)

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::recover_low_in_stages

(

"abinitio:recover_low_in_stages"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax

(

"abinitio:relax"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_failures

(

"abinitio:relax_failures"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_with_jumps

(

"abinitio:relax_with_jumps"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::rerun

(

"abinitio:rerun"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::return_full_atom

(

"abinitio:return_full_atom"

)

RealOptionKey const basic::options::OptionKeys::abinitio::rg_reweight

(

"abinitio:rg_reweight"

)

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::rmsd_residues

(

"abinitio:rmsd_residues"

)

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_helix

(

"abinitio:rsd_wt_helix"

)

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_loop

(

"abinitio:rsd_wt_loop"

)

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_strand

(

"abinitio:rsd_wt_strand"

)

RealOptionKey const basic::options::OptionKeys::abinitio::SEP_score_scalling

(

"abinitio:SEP_score_scalling"

)

FileOptionKey const basic::options::OptionKeys::abinitio::sheet_edge_pred

(

"abinitio:sheet_edge_pred"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::skip_convergence_check

(

"abinitio:skip_convergence_check"

)

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::skip_stages

(

"abinitio:skip_stages"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::smooth_cycles_only

(

"abinitio:smooth_cycles_only"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage1_patch

(

"abinitio:stage1_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage2_patch

(

"abinitio:stage2_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3a_patch

(

"abinitio:stage3a_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3b_patch

(

"abinitio:stage3b_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage4_patch

(

"abinitio:stage4_patch"

)

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage5_patch

(

"abinitio:stage5_patch"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::start_native

(

"abinitio:start_native"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_3mers

(

"abinitio:steal_3mers"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_9mers

(

"abinitio:steal_9mers"

)

RealOptionKey const basic::options::OptionKeys::abinitio::strand_dist_cutoff

(

"abinitio:strand_dist_cutoff"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::stretch_strand_dist_cutoff

(

"abinitio:stretch_strand_dist_cutoff"

)

IntegerOptionKey const basic::options::OptionKeys::abinitio::symmetry_residue

(

"abinitio:symmetry_residue"

)

RealOptionKey const basic::options::OptionKeys::abinitio::temperature

(

"abinitio:temperature"

)

BooleanOptionKey const basic::options::OptionKeys::abinitio::use_filters

(

"abinitio:use_filters"

)

RealOptionKey const basic::options::OptionKeys::abinitio::vdw_weight_stage1

(

"abinitio:vdw_weight_stage1"

)

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::abinitio::abinitio("abinitio")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::bGDT("abinitio:bGDT")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::clear_pose_cache("abinitio:clear_pose_cache")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_chbrk("abinitio:close_chbrk")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops("abinitio:close_loops")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::close_loops_by_idealizing("abinitio:close_loops_by_idealizing")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug("abinitio:debug")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::debug_structures("abinitio:debug_structures")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::detect_disulfide_before_relax("abinitio:detect_disulfide_before_relax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::dump_frags("abinitio:dump_frags")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::end_bias("abinitio:end_bias")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::exit_when_converged("abinitio:exit_when_converged")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::explicit_pdb_debug("abinitio:explicit_pdb_debug")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::fast("abinitio:fast")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::fastrelax("abinitio:fastrelax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::final_clean_relax("abinitio:final_clean_relax")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::fix_residues_to_native("abinitio:fix_residues_to_native")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::abinitio::HD_EX_Info("abinitio:HD_EX_Info")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::HD_fa_penalty("abinitio:HD_fa_penalty")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::HD_penalty("abinitio:HD_penalty")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::include_stage5("abinitio:include_stage5")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::increase_cycles("abinitio:increase_cycles")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::jdist_rerun("abinitio:jdist_rerun")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins("abinitio:kill_hairpins")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::kill_hairpins_frequency("abinitio:kill_hairpins_frequency")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::abinitio::log_frags("abinitio:log_frags")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::membrane("abinitio:membrane")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::multifastrelax("abinitio:multifastrelax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::no_write_failures("abinitio:no_write_failures")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_3mer_frags("abinitio:number_3mer_frags")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::abinitio::number_9mer_frags("abinitio:number_9mer_frags")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::only_stage1("abinitio:only_stage1")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_margin("abinitio:optimize_cutpoints_margin")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::optimize_cutpoints_using_kic("abinitio:optimize_cutpoints_using_kic")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::override_vdw_all_stages("abinitio:override_vdw_all_stages")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::perturb("abinitio:perturb")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::prob_perturb_weights("abinitio:prob_perturb_weights")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::process_store("abinitio:process_store")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::recover_low_in_stages("abinitio:recover_low_in_stages")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax("abinitio:relax")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_failures("abinitio:relax_failures")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::relax_with_jumps("abinitio:relax_with_jumps")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::rerun("abinitio:rerun")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::return_full_atom("abinitio:return_full_atom")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::rg_reweight("abinitio:rg_reweight")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::rmsd_residues("abinitio:rmsd_residues")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_helix("abinitio:rsd_wt_helix")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_loop("abinitio:rsd_wt_loop")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::rsd_wt_strand("abinitio:rsd_wt_strand")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::SEP_score_scalling("abinitio:SEP_score_scalling")

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::abinitio::sheet_edge_pred("abinitio:sheet_edge_pred")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::skip_convergence_check("abinitio:skip_convergence_check")

Referenced by add_rosetta_options_0().

IntegerVectorOptionKey const basic::options::OptionKeys::abinitio::skip_stages("abinitio:skip_stages")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::smooth_cycles_only("abinitio:smooth_cycles_only")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage1_patch("abinitio:stage1_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage2_patch("abinitio:stage2_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3a_patch("abinitio:stage3a_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage3b_patch("abinitio:stage3b_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage4_patch("abinitio:stage4_patch")

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::abinitio::stage5_patch("abinitio:stage5_patch")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::start_native("abinitio:start_native")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_3mers("abinitio:steal_3mers")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::steal_9mers("abinitio:steal_9mers")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::strand_dist_cutoff("abinitio:strand_dist_cutoff")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::stretch_strand_dist_cutoff("abinitio:stretch_strand_dist_cutoff")

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::abinitio::symmetry_residue("abinitio:symmetry_residue")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::temperature("abinitio:temperature")

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::abinitio::use_filters("abinitio:use_filters")

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::abinitio::vdw_weight_stage1("abinitio:vdw_weight_stage1")

Referenced by add_rosetta_options_0().