basic::options::OptionKeys::mh Namespace Reference

Namespaces
	filter
	score

Functions
BooleanOptionKey const	mh ("mh")
StringOptionKey const	motif_out_file ("mh:motif_out_file")
FileVectorOptionKey const	harvest_motifs ("mh:harvest_motifs")
FileVectorOptionKey const	print_motifs ("mh:print_motifs")
FileVectorOptionKey const	dump_motif_pdbs ("mh:dump_motif_pdbs")
FileVectorOptionKey const	merge_motifs ("mh:merge_motifs")
BooleanOptionKey const	merge_motifs_one_per_bin ("mh:merge_motifs_one_per_bin")
BooleanOptionKey const	generate_reverse_motifs ("mh:generate_reverse_motifs")
FileVectorOptionKey const	dump_input_pdb ("mh:dump_input_pdb")
FileVectorOptionKey const	score_pdbs ("mh:score_pdbs")
FileVectorOptionKey const	xform_score_data ("mh:xform_score_data")
FileVectorOptionKey const	xform_score_data_ee ("mh:xform_score_data_ee")
FileVectorOptionKey const	xform_score_data_eh ("mh:xform_score_data_eh")
FileVectorOptionKey const	xform_score_data_he ("mh:xform_score_data_he")
FileVectorOptionKey const	xform_score_data_hh ("mh:xform_score_data_hh")
FileVectorOptionKey const	xform_score_data_sspair ("mh:xform_score_data_sspair")
FileVectorOptionKey const	sequence_recovery ("mh:sequence_recovery")
FileVectorOptionKey const	explicit_motif_score ("mh:explicit_motif_score")
FileVectorOptionKey const	input_motifs ("mh:input_motifs")
FileVectorOptionKey const	harvest_scores ("mh:harvest_scores")
FileOptionKey const	print_scores ("mh:print_scores")
FileVectorOptionKey const	dump_matching_motifs ("mh:dump_matching_motifs")
RealOptionKey const	dump_matching_motifs_cutoff ("mh:dump_matching_motifs_cutoff")
BooleanOptionKey const	score_across_chains_only ("mh:score_across_chains_only")
BooleanOptionKey const	normalize_score_ncontact ("mh:normalize_score_ncontact")
IntegerOptionKey const	dump_motif_pdbs_min_counts ("mh:dump_motif_pdbs_min_counts")
RealOptionKey const	hash_cart_size ("mh:hash_cart_size")
RealOptionKey const	hash_cart_resl ("mh:hash_cart_resl")
RealOptionKey const	hash_angle_resl ("mh:hash_angle_resl")
IntegerOptionKey const	harvest_motifs_min_hh_ends ("mh:harvest_motifs_min_hh_ends")
IntegerOptionKey const	harvest_scores_min_count ("mh:harvest_scores_min_count")
BooleanOptionKey const	ignore_io_errors ("mh:ignore_io_errors")
RealOptionKey const	motif_match_radius ("mh:motif_match_radius")
RealVectorOptionKey const	merge_similar_motifs ("mh:merge_similar_motifs")

Variables
BooleanOptionKey const	mh
StringOptionKey const	motif_out_file
FileVectorOptionKey const	harvest_motifs
FileVectorOptionKey const	print_motifs
FileVectorOptionKey const	dump_motif_pdbs
FileVectorOptionKey const	merge_motifs
BooleanOptionKey const	merge_motifs_one_per_bin
BooleanOptionKey const	generate_reverse_motifs
FileVectorOptionKey const	dump_input_pdb
FileVectorOptionKey const	score_pdbs
FileVectorOptionKey const	xform_score_data
FileVectorOptionKey const	xform_score_data_ee
FileVectorOptionKey const	xform_score_data_eh
FileVectorOptionKey const	xform_score_data_he
FileVectorOptionKey const	xform_score_data_hh
FileVectorOptionKey const	xform_score_data_sspair
FileVectorOptionKey const	sequence_recovery
FileVectorOptionKey const	explicit_motif_score
FileVectorOptionKey const	input_motifs
FileVectorOptionKey const	harvest_scores
FileOptionKey const	print_scores
FileVectorOptionKey const	dump_matching_motifs
RealOptionKey const	dump_matching_motifs_cutoff
BooleanOptionKey const	score_across_chains_only
BooleanOptionKey const	normalize_score_ncontact
IntegerOptionKey const	dump_motif_pdbs_min_counts
RealOptionKey const	hash_cart_size
RealOptionKey const	hash_cart_resl
RealOptionKey const	hash_angle_resl
IntegerOptionKey const	harvest_motifs_min_hh_ends
IntegerOptionKey const	harvest_scores_min_count
BooleanOptionKey const	ignore_io_errors
RealOptionKey const	motif_match_radius
RealVectorOptionKey const	merge_similar_motifs

Function Documentation

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_input_pdb

(

"mh:dump_input_pdb"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs

(

"mh:dump_matching_motifs"

)

RealOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs_cutoff

(

"mh:dump_matching_motifs_cutoff"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs

(

"mh:dump_motif_pdbs"

)

IntegerOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs_min_counts

(

"mh:dump_motif_pdbs_min_counts"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::explicit_motif_score

(

"mh:explicit_motif_score"

)

BooleanOptionKey const basic::options::OptionKeys::mh::generate_reverse_motifs

(

"mh:generate_reverse_motifs"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_motifs

(

"mh:harvest_motifs"

)

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends

(

"mh:harvest_motifs_min_hh_ends"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_scores

(

"mh:harvest_scores"

)

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_scores_min_count

(

"mh:harvest_scores_min_count"

)

RealOptionKey const basic::options::OptionKeys::mh::hash_angle_resl

(

"mh:hash_angle_resl"

)

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_resl

(

"mh:hash_cart_resl"

)

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_size

(

"mh:hash_cart_size"

)

BooleanOptionKey const basic::options::OptionKeys::mh::ignore_io_errors

(

"mh:ignore_io_errors"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::input_motifs

(

"mh:input_motifs"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::merge_motifs

(

"mh:merge_motifs"

)

BooleanOptionKey const basic::options::OptionKeys::mh::merge_motifs_one_per_bin

(

"mh:merge_motifs_one_per_bin"

)

RealVectorOptionKey const basic::options::OptionKeys::mh::merge_similar_motifs

(

"mh:merge_similar_motifs"

)

BooleanOptionKey const basic::options::OptionKeys::mh::mh

(

"mh"

)

RealOptionKey const basic::options::OptionKeys::mh::motif_match_radius

(

"mh:motif_match_radius"

)

StringOptionKey const basic::options::OptionKeys::mh::motif_out_file

(

"mh:motif_out_file"

)

BooleanOptionKey const basic::options::OptionKeys::mh::normalize_score_ncontact

(

"mh:normalize_score_ncontact"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::print_motifs

(

"mh:print_motifs"

)

FileOptionKey const basic::options::OptionKeys::mh::print_scores

(

"mh:print_scores"

)

BooleanOptionKey const basic::options::OptionKeys::mh::score_across_chains_only

(

"mh:score_across_chains_only"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::score_pdbs

(

"mh:score_pdbs"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::sequence_recovery

(

"mh:sequence_recovery"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data

(

"mh:xform_score_data"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_ee

(

"mh:xform_score_data_ee"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_eh

(

"mh:xform_score_data_eh"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_he

(

"mh:xform_score_data_he"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_hh

(

"mh:xform_score_data_hh"

)

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_sspair

(

"mh:xform_score_data_sspair"

)

Variable Documentation

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_input_pdb("mh:dump_input_pdb")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs("mh:dump_matching_motifs")

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::mh::dump_matching_motifs_cutoff("mh:dump_matching_motifs_cutoff")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs("mh:dump_motif_pdbs")

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::mh::dump_motif_pdbs_min_counts("mh:dump_motif_pdbs_min_counts")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::explicit_motif_score("mh:explicit_motif_score")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::generate_reverse_motifs("mh:generate_reverse_motifs")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_motifs("mh:harvest_motifs")

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_motifs_min_hh_ends("mh:harvest_motifs_min_hh_ends")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::harvest_scores("mh:harvest_scores")

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::mh::harvest_scores_min_count("mh:harvest_scores_min_count")

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::mh::hash_angle_resl("mh:hash_angle_resl")

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_resl("mh:hash_cart_resl")

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::mh::hash_cart_size("mh:hash_cart_size")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::ignore_io_errors("mh:ignore_io_errors")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::input_motifs("mh:input_motifs")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::merge_motifs("mh:merge_motifs")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::merge_motifs_one_per_bin("mh:merge_motifs_one_per_bin")

Referenced by add_rosetta_options_3().

RealVectorOptionKey const basic::options::OptionKeys::mh::merge_similar_motifs("mh:merge_similar_motifs")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::mh("mh")

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::mh::motif_match_radius("mh:motif_match_radius")

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::mh::motif_out_file("mh:motif_out_file")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::normalize_score_ncontact("mh:normalize_score_ncontact")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::print_motifs("mh:print_motifs")

Referenced by add_rosetta_options_3().

FileOptionKey const basic::options::OptionKeys::mh::print_scores("mh:print_scores")

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::mh::score_across_chains_only("mh:score_across_chains_only")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::score_pdbs("mh:score_pdbs")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::sequence_recovery("mh:sequence_recovery")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data("mh:xform_score_data")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_ee("mh:xform_score_data_ee")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_eh("mh:xform_score_data_eh")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_he("mh:xform_score_data_he")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_hh("mh:xform_score_data_hh")

Referenced by add_rosetta_options_3().

FileVectorOptionKey const basic::options::OptionKeys::mh::xform_score_data_sspair("mh:xform_score_data_sspair")

Referenced by add_rosetta_options_3().