out::file Namespace Reference

Functions
BooleanOptionKey const	file ("out:file")
StringOptionKey const	o ("out:file:o")
FileOptionKey const	design_contrast ("out:file:design_contrast")
StringOptionKey const	residue_type_set ("out:file:residue_type_set")
StringOptionKey const	atom_tree_diff ("out:file:atom_tree_diff")
IntegerOptionKey const	atom_tree_diff_bb ("out:file:atom_tree_diff_bb")
IntegerOptionKey const	atom_tree_diff_sc ("out:file:atom_tree_diff_sc")
IntegerOptionKey const	atom_tree_diff_bl ("out:file:atom_tree_diff_bl")
StringOptionKey const	alignment ("out:file:alignment")
StringOptionKey const	score_only ("out:file:score_only")
StringOptionKey const	scorefile ("out:file:scorefile")
StringOptionKey const	silent ("out:file:silent")
StringOptionKey const	silent_struct_type ("out:file:silent_struct_type")
BooleanOptionKey const	silent_print_all_score_headers ("out:file:silent_print_all_score_headers")
BooleanOptionKey const	silent_decoytime ("out:file:silent_decoytime")
IntegerOptionKey const	silent_comment_bound ("out:file:silent_comment_bound")
BooleanOptionKey const	raw ("out:file:raw")
BooleanOptionKey const	weight_silent_scores ("out:file:weight_silent_scores")
BooleanOptionKey const	silent_preserve_H ("out:file:silent_preserve_H")
BooleanOptionKey const	fullatom ("out:file:fullatom")
BooleanOptionKey const	suppress_zero_occ_pdb_output ("out:file:suppress_zero_occ_pdb_output")
BooleanOptionKey const	output_virtual ("out:file:output_virtual")
BooleanOptionKey const	no_output_cen ("out:file:no_output_cen")
BooleanOptionKey const	output_orbitals ("out:file:output_orbitals")
BooleanOptionKey const	renumber_pdb ("out:file:renumber_pdb")
BooleanOptionKey const	pdb_parents ("out:file:pdb_parents")
BooleanOptionKey const	per_chain_renumbering ("out:file:per_chain_renumbering")
BooleanOptionKey const	output_torsions ("out:file:output_torsions")
BooleanOptionKey const	use_occurrence_data ("out:file:use_occurrence_data")
BooleanOptionKey const	pdb_comments ("out:file:pdb_comments")
BooleanOptionKey const	force_nonideal_structure ("out:file:force_nonideal_structure")
BooleanOptionKey const	write_pdb_link_records ("out:file:write_pdb_link_records")
BooleanOptionKey const	dont_rewrite_dunbrack_database ("out:file:dont_rewrite_dunbrack_database")
StringOptionKey const	frag_prefix ("out:file:frag_prefix")

Function Documentation

StringOptionKey const out::file::alignment

(

"out:file:alignment"

)

StringOptionKey const out::file::atom_tree_diff

(

"out:file:atom_tree_diff"

)

IntegerOptionKey const out::file::atom_tree_diff_bb

(

"out:file:atom_tree_diff_bb"

)

IntegerOptionKey const out::file::atom_tree_diff_bl

(

"out:file:atom_tree_diff_bl"

)

IntegerOptionKey const out::file::atom_tree_diff_sc

(

"out:file:atom_tree_diff_sc"

)

FileOptionKey const out::file::design_contrast

(

"out:file:design_contrast"

)

BooleanOptionKey const out::file::dont_rewrite_dunbrack_database

(

"out:file:dont_rewrite_dunbrack_database"

)

BooleanOptionKey const out::file::file

(

"out:file"

)

BooleanOptionKey const out::file::force_nonideal_structure

(

"out:file:force_nonideal_structure"

)

StringOptionKey const out::file::frag_prefix

(

"out:file:frag_prefix"

)

BooleanOptionKey const out::file::fullatom

(

"out:file:fullatom"

)

Referenced by basic::options::process().

BooleanOptionKey const out::file::no_output_cen

(

"out:file:no_output_cen"

)

StringOptionKey const out::file::o

(

"out:file:o"

)

BooleanOptionKey const out::file::output_orbitals

(

"out:file:output_orbitals"

)

BooleanOptionKey const out::file::output_torsions

(

"out:file:output_torsions"

)

BooleanOptionKey const out::file::output_virtual

(

"out:file:output_virtual"

)

BooleanOptionKey const out::file::pdb_comments

(

"out:file:pdb_comments"

)

BooleanOptionKey const out::file::pdb_parents

(

"out:file:pdb_parents"

)

BooleanOptionKey const out::file::per_chain_renumbering

(

"out:file:per_chain_renumbering"

)

BooleanOptionKey const out::file::raw

(

"out:file:raw"

)

BooleanOptionKey const out::file::renumber_pdb

(

"out:file:renumber_pdb"

)

StringOptionKey const out::file::residue_type_set

(

"out:file:residue_type_set"

)

Referenced by basic::options::process().

StringOptionKey const out::file::score_only

(

"out:file:score_only"

)

StringOptionKey const out::file::scorefile

(

"out:file:scorefile"

)

StringOptionKey const out::file::silent

(

"out:file:silent"

)

IntegerOptionKey const out::file::silent_comment_bound

(

"out:file:silent_comment_bound"

)

BooleanOptionKey const out::file::silent_decoytime

(

"out:file:silent_decoytime"

)

BooleanOptionKey const out::file::silent_preserve_H

(

"out:file:silent_preserve_H"

)

BooleanOptionKey const out::file::silent_print_all_score_headers

(

"out:file:silent_print_all_score_headers"

)

StringOptionKey const out::file::silent_struct_type

(

"out:file:silent_struct_type"

)

BooleanOptionKey const out::file::suppress_zero_occ_pdb_output

(

"out:file:suppress_zero_occ_pdb_output"

)

BooleanOptionKey const out::file::use_occurrence_data

(

"out:file:use_occurrence_data"

)

BooleanOptionKey const out::file::weight_silent_scores

(

"out:file:weight_silent_scores"

)

BooleanOptionKey const out::file::write_pdb_link_records

(

"out:file:write_pdb_link_records"

)