basic::options::OptionKeys::constraints Namespace Reference

Functions
BooleanOptionKey const	constraints ("constraints")
RealOptionKey const	CA_tether ("constraints:CA_tether")
BooleanOptionKey const	exit_on_bad_read ("constraints:exit_on_bad_read")
StringVectorOptionKey const	cst_file ("constraints:cst_file")
RealOptionKey const	cst_weight ("constraints:cst_weight")
RealOptionKey const	max_cst_dist ("constraints:max_cst_dist")
StringVectorOptionKey const	cst_fa_file ("constraints:cst_fa_file")
RealOptionKey const	cst_fa_weight ("constraints:cst_fa_weight")
BooleanOptionKey const	normalize_mixture_func ("constraints:normalize_mixture_func")
BooleanOptionKey const	penalize_mixture_func ("constraints:penalize_mixture_func")
FileOptionKey const	forest_file ("constraints:forest_file")
BooleanOptionKey const	compute_total_dist_cst ("constraints:compute_total_dist_cst")
IntegerOptionKey const	cull_with_native ("constraints:cull_with_native")
FileOptionKey const	dump_cst_set ("constraints:dump_cst_set")
IntegerVectorOptionKey const	evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep")
BooleanOptionKey const	named ("constraints:named")
BooleanOptionKey const	no_cst_in_relax ("constraints:no_cst_in_relax")
BooleanOptionKey const	no_linearize_bounded ("constraints:no_linearize_bounded")
RealOptionKey const	pocket_constraint_weight ("constraints:pocket_constraint_weight")
BooleanOptionKey const	pocket_zero_derivatives ("constraints:pocket_zero_derivatives")
BooleanOptionKey const	viol ("constraints:viol")
IntegerOptionKey const	viol_level ("constraints:viol_level")
StringOptionKey const	viol_type ("constraints:viol_type")
RealOptionKey const	sog_cst_param ("constraints:sog_cst_param")
RealOptionKey const	sog_upper_bound ("constraints:sog_upper_bound")
BooleanOptionKey const	epr_distance ("constraints:epr_distance")
IntegerOptionKey const	combine ("constraints:combine")
FileOptionKey const	combine_exclude_region ("constraints:combine_exclude_region")
BooleanOptionKey const	skip_redundant ("constraints:skip_redundant")
IntegerOptionKey const	skip_redundant_width ("constraints:skip_redundant_width")
RealOptionKey const	increase_constraints ("constraints:increase_constraints")

Variables
BooleanOptionKey const	constraints
RealOptionKey const	CA_tether
BooleanOptionKey const	exit_on_bad_read
StringVectorOptionKey const	cst_file
RealOptionKey const	cst_weight
RealOptionKey const	max_cst_dist
StringVectorOptionKey const	cst_fa_file
RealOptionKey const	cst_fa_weight
BooleanOptionKey const	normalize_mixture_func
BooleanOptionKey const	penalize_mixture_func
FileOptionKey const	forest_file
BooleanOptionKey const	compute_total_dist_cst
IntegerOptionKey const	cull_with_native
FileOptionKey const	dump_cst_set
IntegerVectorOptionKey const	evaluate_max_seq_sep
BooleanOptionKey const	named
BooleanOptionKey const	no_cst_in_relax
BooleanOptionKey const	no_linearize_bounded
RealOptionKey const	pocket_constraint_weight
BooleanOptionKey const	pocket_zero_derivatives
BooleanOptionKey const	viol
IntegerOptionKey const	viol_level
StringOptionKey const	viol_type
RealOptionKey const	sog_cst_param
RealOptionKey const	sog_upper_bound
BooleanOptionKey const	epr_distance
IntegerOptionKey const	combine
FileOptionKey const	combine_exclude_region
BooleanOptionKey const	skip_redundant
IntegerOptionKey const	skip_redundant_width
RealOptionKey const	increase_constraints

Function Documentation

RealOptionKey const basic::options::OptionKeys::constraints::CA_tether

(

"constraints:CA_tether"

)

IntegerOptionKey const basic::options::OptionKeys::constraints::combine

(

"constraints:combine"

)

FileOptionKey const basic::options::OptionKeys::constraints::combine_exclude_region

(

"constraints:combine_exclude_region"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::compute_total_dist_cst

(

"constraints:compute_total_dist_cst"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::constraints

(

"constraints"

)

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_fa_file

(

"constraints:cst_fa_file"

)

RealOptionKey const basic::options::OptionKeys::constraints::cst_fa_weight

(

"constraints:cst_fa_weight"

)

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_file

(

"constraints:cst_file"

)

RealOptionKey const basic::options::OptionKeys::constraints::cst_weight

(

"constraints:cst_weight"

)

IntegerOptionKey const basic::options::OptionKeys::constraints::cull_with_native

(

"constraints:cull_with_native"

)

FileOptionKey const basic::options::OptionKeys::constraints::dump_cst_set

(

"constraints:dump_cst_set"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::epr_distance

(

"constraints:epr_distance"

)

IntegerVectorOptionKey const basic::options::OptionKeys::constraints::evaluate_max_seq_sep

(

"constraints:evaluate_max_seq_sep"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::exit_on_bad_read

(

"constraints:exit_on_bad_read"

)

FileOptionKey const basic::options::OptionKeys::constraints::forest_file

(

"constraints:forest_file"

)

RealOptionKey const basic::options::OptionKeys::constraints::increase_constraints

(

"constraints:increase_constraints"

)

RealOptionKey const basic::options::OptionKeys::constraints::max_cst_dist

(

"constraints:max_cst_dist"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::named

(

"constraints:named"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::no_cst_in_relax

(

"constraints:no_cst_in_relax"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::no_linearize_bounded

(

"constraints:no_linearize_bounded"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::normalize_mixture_func

(

"constraints:normalize_mixture_func"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::penalize_mixture_func

(

"constraints:penalize_mixture_func"

)

RealOptionKey const basic::options::OptionKeys::constraints::pocket_constraint_weight

(

"constraints:pocket_constraint_weight"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::pocket_zero_derivatives

(

"constraints:pocket_zero_derivatives"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::skip_redundant

(

"constraints:skip_redundant"

)

IntegerOptionKey const basic::options::OptionKeys::constraints::skip_redundant_width

(

"constraints:skip_redundant_width"

)

RealOptionKey const basic::options::OptionKeys::constraints::sog_cst_param

(

"constraints:sog_cst_param"

)

RealOptionKey const basic::options::OptionKeys::constraints::sog_upper_bound

(

"constraints:sog_upper_bound"

)

BooleanOptionKey const basic::options::OptionKeys::constraints::viol

(

"constraints:viol"

)

IntegerOptionKey const basic::options::OptionKeys::constraints::viol_level

(

"constraints:viol_level"

)

StringOptionKey const basic::options::OptionKeys::constraints::viol_type

(

"constraints:viol_type"

)

Variable Documentation

RealOptionKey const basic::options::OptionKeys::constraints::CA_tether("constraints:CA_tether")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::constraints::combine("constraints:combine")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::constraints::combine_exclude_region("constraints:combine_exclude_region")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::compute_total_dist_cst("constraints:compute_total_dist_cst")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::constraints("constraints")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_fa_file("constraints:cst_fa_file")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::cst_fa_weight("constraints:cst_fa_weight")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::constraints::cst_file("constraints:cst_file")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::cst_weight("constraints:cst_weight")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::constraints::cull_with_native("constraints:cull_with_native")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::constraints::dump_cst_set("constraints:dump_cst_set")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::epr_distance("constraints:epr_distance")

Referenced by add_rosetta_options_2().

IntegerVectorOptionKey const basic::options::OptionKeys::constraints::evaluate_max_seq_sep("constraints:evaluate_max_seq_sep")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::exit_on_bad_read("constraints:exit_on_bad_read")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::constraints::forest_file("constraints:forest_file")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::increase_constraints("constraints:increase_constraints")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::max_cst_dist("constraints:max_cst_dist")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::named("constraints:named")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::no_cst_in_relax("constraints:no_cst_in_relax")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::no_linearize_bounded("constraints:no_linearize_bounded")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::normalize_mixture_func("constraints:normalize_mixture_func")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::penalize_mixture_func("constraints:penalize_mixture_func")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::pocket_constraint_weight("constraints:pocket_constraint_weight")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::pocket_zero_derivatives("constraints:pocket_zero_derivatives")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::skip_redundant("constraints:skip_redundant")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::constraints::skip_redundant_width("constraints:skip_redundant_width")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::sog_cst_param("constraints:sog_cst_param")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::constraints::sog_upper_bound("constraints:sog_upper_bound")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::constraints::viol("constraints:viol")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::constraints::viol_level("constraints:viol_level")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::constraints::viol_type("constraints:viol_type")

Referenced by add_rosetta_options_2().