basic::options::OptionKeys::james Namespace Reference

Functions
BooleanOptionKey const	james ("james")
IntegerOptionKey const	min_seqsep ("james:min_seqsep")
StringVectorOptionKey const	atom_names ("james:atom_names")
RealVectorOptionKey const	dist_thresholds ("james:dist_thresholds")
RealVectorOptionKey const	torsion_thresholds ("james:torsion_thresholds")
RealOptionKey const	sog_cutoff ("james:sog_cutoff")
BooleanOptionKey const	shift_sog_func ("james:shift_sog_func")
StringOptionKey const	min_type ("james:min_type")
RealOptionKey const	min_tol ("james:min_tol")
BooleanOptionKey const	debug ("james:debug")
RealOptionKey const	real ("james:real")
IntegerOptionKey const	n_designs ("james:n_designs")
BooleanOptionKey const	awesome_mode ("james:awesome_mode")
IntegerOptionKey const	n_clusters ("james:n_clusters")
BooleanOptionKey const	thread_unaligned ("james:thread_unaligned")

Variables
BooleanOptionKey const	james
IntegerOptionKey const	min_seqsep
StringVectorOptionKey const	atom_names
RealVectorOptionKey const	dist_thresholds
RealVectorOptionKey const	torsion_thresholds
RealOptionKey const	sog_cutoff
BooleanOptionKey const	shift_sog_func
StringOptionKey const	min_type
RealOptionKey const	min_tol
BooleanOptionKey const	debug
RealOptionKey const	real
IntegerOptionKey const	n_designs
BooleanOptionKey const	awesome_mode
IntegerOptionKey const	n_clusters
BooleanOptionKey const	thread_unaligned

Function Documentation

StringVectorOptionKey const basic::options::OptionKeys::james::atom_names

(

"james:atom_names"

)

BooleanOptionKey const basic::options::OptionKeys::james::awesome_mode

(

"james:awesome_mode"

)

BooleanOptionKey const basic::options::OptionKeys::james::debug

(

"james:debug"

)

RealVectorOptionKey const basic::options::OptionKeys::james::dist_thresholds

(

"james:dist_thresholds"

)

BooleanOptionKey const basic::options::OptionKeys::james::james

(

"james"

)

IntegerOptionKey const basic::options::OptionKeys::james::min_seqsep

(

"james:min_seqsep"

)

RealOptionKey const basic::options::OptionKeys::james::min_tol

(

"james:min_tol"

)

StringOptionKey const basic::options::OptionKeys::james::min_type

(

"james:min_type"

)

IntegerOptionKey const basic::options::OptionKeys::james::n_clusters

(

"james:n_clusters"

)

IntegerOptionKey const basic::options::OptionKeys::james::n_designs

(

"james:n_designs"

)

RealOptionKey const basic::options::OptionKeys::james::real

(

"james:real"

)

BooleanOptionKey const basic::options::OptionKeys::james::shift_sog_func

(

"james:shift_sog_func"

)

RealOptionKey const basic::options::OptionKeys::james::sog_cutoff

(

"james:sog_cutoff"

)

BooleanOptionKey const basic::options::OptionKeys::james::thread_unaligned

(

"james:thread_unaligned"

)

RealVectorOptionKey const basic::options::OptionKeys::james::torsion_thresholds

(

"james:torsion_thresholds"

)

Variable Documentation

StringVectorOptionKey const basic::options::OptionKeys::james::atom_names("james:atom_names")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::james::awesome_mode("james:awesome_mode")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::james::debug("james:debug")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::james::dist_thresholds("james:dist_thresholds")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::james::james("james")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::james::min_seqsep("james:min_seqsep")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::james::min_tol("james:min_tol")

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::james::min_type("james:min_type")

Referenced by add_rosetta_options_0(), add_rosetta_options_1(), and add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::james::n_clusters("james:n_clusters")

Referenced by add_rosetta_options_1(), numeric::average_link_clustering(), numeric::complete_link_clustering(), and numeric::single_link_clustering().

IntegerOptionKey const basic::options::OptionKeys::james::n_designs("james:n_designs")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::james::real("james:real")

Referenced by add_rosetta_options_1(), numeric::fourier::kf_bfly3(), numeric::fourier::kf_bfly4(), numeric::fourier::kf_bfly5(), numeric::fourier::kiss_fftri(), and numeric::model_quality::rsym_eigenval().

BooleanOptionKey const basic::options::OptionKeys::james::shift_sog_func("james:shift_sog_func")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::james::sog_cutoff("james:sog_cutoff")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::james::thread_unaligned("james:thread_unaligned")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::james::torsion_thresholds("james:torsion_thresholds")

Referenced by add_rosetta_options_1().