basic::options::OptionKeys::membrane Namespace Reference

Functions
BooleanOptionKey const	membrane ("membrane")
FileVectorOptionKey const	lipid_acc_files ("membrane:lipid_acc_files")
FileVectorOptionKey const	span_files ("membrane:span_files")
FileVectorOptionKey const	embed_files ("membrane:embed_files")
BooleanOptionKey const	include_lips ("membrane:include_lips")
IntegerOptionKey const	normal_cycles ("membrane:normal_cycles")
RealOptionKey const	normal_mag ("membrane:normal_mag")
RealOptionKey const	center_mag ("membrane:center_mag")
RealOptionKey const	smooth_move_frac ("membrane:smooth_move_frac")
BooleanOptionKey const	no_interpolate_Mpair ("membrane:no_interpolate_Mpair")
BooleanOptionKey const	Menv_penalties ("membrane:Menv_penalties")
BooleanOptionKey const	Membed_init ("membrane:Membed_init")
BooleanOptionKey const	Fa_Membed_update ("membrane:Fa_Membed_update")
BooleanOptionKey const	center_search ("membrane:center_search")
BooleanOptionKey const	normal_search ("membrane:normal_search")
IntegerOptionKey const	center_max_delta ("membrane:center_max_delta")
IntegerOptionKey const	normal_start_angle ("membrane:normal_start_angle")
IntegerOptionKey const	normal_delta_angle ("membrane:normal_delta_angle")
IntegerOptionKey const	normal_max_angle ("membrane:normal_max_angle")
BooleanOptionKey const	debug ("membrane:debug")
BooleanOptionKey const	fixed_membrane ("membrane:fixed_membrane")
RealVectorOptionKey const	membrane_center ("membrane:membrane_center")
RealVectorOptionKey const	membrane_normal ("membrane:membrane_normal")
BooleanOptionKey const	view ("membrane:view")
BooleanOptionKey const	Mhbond_depth ("membrane:Mhbond_depth")
RealOptionKey const	thickness ("membrane:thickness")

Variables
BooleanOptionKey const	membrane
FileVectorOptionKey const	lipid_acc_files
FileVectorOptionKey const	span_files
FileVectorOptionKey const	embed_files
BooleanOptionKey const	include_lips
IntegerOptionKey const	normal_cycles
RealOptionKey const	normal_mag
RealOptionKey const	center_mag
RealOptionKey const	smooth_move_frac
BooleanOptionKey const	no_interpolate_Mpair
BooleanOptionKey const	Menv_penalties
BooleanOptionKey const	Membed_init
BooleanOptionKey const	Fa_Membed_update
BooleanOptionKey const	center_search
BooleanOptionKey const	normal_search
IntegerOptionKey const	center_max_delta
IntegerOptionKey const	normal_start_angle
IntegerOptionKey const	normal_delta_angle
IntegerOptionKey const	normal_max_angle
BooleanOptionKey const	debug
BooleanOptionKey const	fixed_membrane
RealVectorOptionKey const	membrane_center
RealVectorOptionKey const	membrane_normal
BooleanOptionKey const	view
BooleanOptionKey const	Mhbond_depth
RealOptionKey const	thickness

Function Documentation

RealOptionKey const basic::options::OptionKeys::membrane::center_mag

(

"membrane:center_mag"

)

IntegerOptionKey const basic::options::OptionKeys::membrane::center_max_delta

(

"membrane:center_max_delta"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::center_search

(

"membrane:center_search"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::debug

(

"membrane:debug"

)

FileVectorOptionKey const basic::options::OptionKeys::membrane::embed_files

(

"membrane:embed_files"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::Fa_Membed_update

(

"membrane:Fa_Membed_update"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::fixed_membrane

(

"membrane:fixed_membrane"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::include_lips

(

"membrane:include_lips"

)

FileVectorOptionKey const basic::options::OptionKeys::membrane::lipid_acc_files

(

"membrane:lipid_acc_files"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::Membed_init

(

"membrane:Membed_init"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::membrane

(

"membrane"

)

RealVectorOptionKey const basic::options::OptionKeys::membrane::membrane_center

(

"membrane:membrane_center"

)

RealVectorOptionKey const basic::options::OptionKeys::membrane::membrane_normal

(

"membrane:membrane_normal"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::Menv_penalties

(

"membrane:Menv_penalties"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::Mhbond_depth

(

"membrane:Mhbond_depth"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::no_interpolate_Mpair

(

"membrane:no_interpolate_Mpair"

)

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_cycles

(

"membrane:normal_cycles"

)

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_delta_angle

(

"membrane:normal_delta_angle"

)

RealOptionKey const basic::options::OptionKeys::membrane::normal_mag

(

"membrane:normal_mag"

)

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_max_angle

(

"membrane:normal_max_angle"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::normal_search

(

"membrane:normal_search"

)

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_start_angle

(

"membrane:normal_start_angle"

)

RealOptionKey const basic::options::OptionKeys::membrane::smooth_move_frac

(

"membrane:smooth_move_frac"

)

FileVectorOptionKey const basic::options::OptionKeys::membrane::span_files

(

"membrane:span_files"

)

RealOptionKey const basic::options::OptionKeys::membrane::thickness

(

"membrane:thickness"

)

BooleanOptionKey const basic::options::OptionKeys::membrane::view

(

"membrane:view"

)

Variable Documentation

RealOptionKey const basic::options::OptionKeys::membrane::center_mag("membrane:center_mag")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::membrane::center_max_delta("membrane:center_max_delta")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::center_search("membrane:center_search")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::debug("membrane:debug")

Referenced by add_rosetta_options_0(), add_rosetta_options_1(), and add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::membrane::embed_files("membrane:embed_files")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::Fa_Membed_update("membrane:Fa_Membed_update")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::fixed_membrane("membrane:fixed_membrane")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::include_lips("membrane:include_lips")

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::membrane::lipid_acc_files("membrane:lipid_acc_files")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::Membed_init("membrane:Membed_init")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::membrane("membrane")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::membrane::membrane_center("membrane:membrane_center")

Referenced by add_rosetta_options_1().

RealVectorOptionKey const basic::options::OptionKeys::membrane::membrane_normal("membrane:membrane_normal")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::Menv_penalties("membrane:Menv_penalties")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::Mhbond_depth("membrane:Mhbond_depth")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::no_interpolate_Mpair("membrane:no_interpolate_Mpair")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_cycles("membrane:normal_cycles")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_delta_angle("membrane:normal_delta_angle")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::membrane::normal_mag("membrane:normal_mag")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_max_angle("membrane:normal_max_angle")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::normal_search("membrane:normal_search")

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::membrane::normal_start_angle("membrane:normal_start_angle")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::membrane::smooth_move_frac("membrane:smooth_move_frac")

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::membrane::span_files("membrane:span_files")

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::membrane::thickness("membrane:thickness")

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::membrane::view("membrane:view")

Referenced by add_rosetta_options_1(), and add_rosetta_options_2().