basic::options::OptionKeys::dna::design Namespace Reference

Namespaces
	reversion
	specificity

Functions
BooleanOptionKey const	design ("dna:design")
BooleanOptionKey const	output_initial_pdb ("dna:design:output_initial_pdb")
BooleanOptionKey const	output_unbound_pdb ("dna:design:output_unbound_pdb")
RealOptionKey const	z_cutoff ("dna:design:z_cutoff")
StringOptionKey const	protein_scan ("dna:design:protein_scan")
StringOptionKey const	checkpoint ("dna:design:checkpoint")
BooleanOptionKey const	minimize ("dna:design:minimize")
IntegerOptionKey const	iterations ("dna:design:iterations")
StringOptionKey const	bb_moves ("dna:design:bb_moves")
StringVectorOptionKey const	dna_defs ("dna:design:dna_defs")
StringOptionKey const	dna_defs_file ("dna:design:dna_defs_file")
BooleanOptionKey const	preminimize_interface ("dna:design:preminimize_interface")
BooleanOptionKey const	prepack_interface ("dna:design:prepack_interface")
BooleanOptionKey const	flush ("dna:design:flush")
BooleanOptionKey const	nopdb ("dna:design:nopdb")
BooleanOptionKey const	nopack ("dna:design:nopack")
BooleanOptionKey const	more_stats ("dna:design:more_stats")
BooleanOptionKey const	pdb_each_iteration ("dna:design:pdb_each_iteration")
BooleanOptionKey const	designable_second_shell ("dna:design:designable_second_shell")
BooleanOptionKey const	base_contacts_only ("dna:design:base_contacts_only")
IntegerOptionKey const	probe_specificity ("dna:design:probe_specificity")
BooleanOptionKey const	reversion_scan ("dna:design:reversion_scan")
BooleanOptionKey const	binding ("dna:design:binding")
RealOptionKey const	Boltz_temp ("dna:design:Boltz_temp")
BooleanOptionKey const	repack_only ("dna:design:repack_only")
BooleanOptionKey const	sparse_pdb_output ("dna:design:sparse_pdb_output")

Variables
BooleanOptionKey const	design
BooleanOptionKey const	output_initial_pdb
BooleanOptionKey const	output_unbound_pdb
RealOptionKey const	z_cutoff
StringOptionKey const	protein_scan
StringOptionKey const	checkpoint
BooleanOptionKey const	minimize
IntegerOptionKey const	iterations
StringOptionKey const	bb_moves
StringVectorOptionKey const	dna_defs
StringOptionKey const	dna_defs_file
BooleanOptionKey const	preminimize_interface
BooleanOptionKey const	prepack_interface
BooleanOptionKey const	flush
BooleanOptionKey const	nopdb
BooleanOptionKey const	nopack
BooleanOptionKey const	more_stats
BooleanOptionKey const	pdb_each_iteration
BooleanOptionKey const	designable_second_shell
BooleanOptionKey const	base_contacts_only
IntegerOptionKey const	probe_specificity
BooleanOptionKey const	reversion_scan
BooleanOptionKey const	binding
RealOptionKey const	Boltz_temp
BooleanOptionKey const	repack_only
BooleanOptionKey const	sparse_pdb_output

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::dna::design::base_contacts_only

(

"dna:design:base_contacts_only"

)

StringOptionKey const basic::options::OptionKeys::dna::design::bb_moves

(

"dna:design:bb_moves"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::binding

(

"dna:design:binding"

)

RealOptionKey const basic::options::OptionKeys::dna::design::Boltz_temp

(

"dna:design:Boltz_temp"

)

StringOptionKey const basic::options::OptionKeys::dna::design::checkpoint

(

"dna:design:checkpoint"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::design

(

"dna:design"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::designable_second_shell

(

"dna:design:designable_second_shell"

)

StringVectorOptionKey const basic::options::OptionKeys::dna::design::dna_defs

(

"dna:design:dna_defs"

)

StringOptionKey const basic::options::OptionKeys::dna::design::dna_defs_file

(

"dna:design:dna_defs_file"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::flush

(

"dna:design:flush"

)

IntegerOptionKey const basic::options::OptionKeys::dna::design::iterations

(

"dna:design:iterations"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::minimize

(

"dna:design:minimize"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::more_stats

(

"dna:design:more_stats"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::nopack

(

"dna:design:nopack"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::nopdb

(

"dna:design:nopdb"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::output_initial_pdb

(

"dna:design:output_initial_pdb"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::output_unbound_pdb

(

"dna:design:output_unbound_pdb"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::pdb_each_iteration

(

"dna:design:pdb_each_iteration"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::preminimize_interface

(

"dna:design:preminimize_interface"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::prepack_interface

(

"dna:design:prepack_interface"

)

IntegerOptionKey const basic::options::OptionKeys::dna::design::probe_specificity

(

"dna:design:probe_specificity"

)

StringOptionKey const basic::options::OptionKeys::dna::design::protein_scan

(

"dna:design:protein_scan"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::repack_only

(

"dna:design:repack_only"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::reversion_scan

(

"dna:design:reversion_scan"

)

BooleanOptionKey const basic::options::OptionKeys::dna::design::sparse_pdb_output

(

"dna:design:sparse_pdb_output"

)

RealOptionKey const basic::options::OptionKeys::dna::design::z_cutoff

(

"dna:design:z_cutoff"

)

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::dna::design::base_contacts_only("dna:design:base_contacts_only")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::dna::design::bb_moves("dna:design:bb_moves")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::binding("dna:design:binding")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::dna::design::Boltz_temp("dna:design:Boltz_temp")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::dna::design::checkpoint("dna:design:checkpoint")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::design("dna:design")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::designable_second_shell("dna:design:designable_second_shell")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::dna::design::dna_defs("dna:design:dna_defs")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::dna::design::dna_defs_file("dna:design:dna_defs_file")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::flush("dna:design:flush")

Referenced by add_rosetta_options_2(), utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT >::flush(), and utility::io::ozstream::operator<<().

IntegerOptionKey const basic::options::OptionKeys::dna::design::iterations("dna:design:iterations")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::minimize("dna:design:minimize")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::more_stats("dna:design:more_stats")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::nopack("dna:design:nopack")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::nopdb("dna:design:nopdb")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::output_initial_pdb("dna:design:output_initial_pdb")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::output_unbound_pdb("dna:design:output_unbound_pdb")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::pdb_each_iteration("dna:design:pdb_each_iteration")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::preminimize_interface("dna:design:preminimize_interface")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::prepack_interface("dna:design:prepack_interface")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::dna::design::probe_specificity("dna:design:probe_specificity")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::dna::design::protein_scan("dna:design:protein_scan")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::repack_only("dna:design:repack_only")

Referenced by add_rosetta_options_1(), and add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::reversion_scan("dna:design:reversion_scan")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::dna::design::sparse_pdb_output("dna:design:sparse_pdb_output")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::dna::design::z_cutoff("dna:design:z_cutoff")

Referenced by add_rosetta_options_2().