basic::options::OptionKeys::cm Namespace Reference

Namespaces
	hybridize
	sanitize

Functions
BooleanOptionKey const	cm ("cm")
BooleanOptionKey const	start_models_only ("cm:start_models_only")
StringOptionKey const	aln_format ("cm:aln_format")
BooleanOptionKey const	recover_side_chains ("cm:recover_side_chains")
FileVectorOptionKey const	steal_extra_residues ("cm:steal_extra_residues")
StringOptionKey const	loop_mover ("cm:loop_mover")
IntegerOptionKey const	loop_close_level ("cm:loop_close_level")
IntegerOptionKey const	min_loop_size ("cm:min_loop_size")
IntegerOptionKey const	max_loop_rebuild ("cm:max_loop_rebuild")
RealOptionKey const	loop_rebuild_filter ("cm:loop_rebuild_filter")
RealOptionKey const	aln_length_filter_quantile ("cm:aln_length_filter_quantile")
IntegerOptionKey const	aln_length_filter ("cm:aln_length_filter")
StringVectorOptionKey const	template_ids ("cm:template_ids")
FileOptionKey const	ligand_pdb ("cm:ligand_pdb")
StringVectorOptionKey const	seq_score ("cm:seq_score")
StringOptionKey const	aligner ("cm:aligner")
RealOptionKey const	min_gap_open ("cm:min_gap_open")
RealOptionKey const	max_gap_open ("cm:max_gap_open")
RealOptionKey const	min_gap_extend ("cm:min_gap_extend")
RealOptionKey const	max_gap_extend ("cm:max_gap_extend")
IntegerOptionKey const	nn ("cm:nn")
RealOptionKey const	fr_temperature ("cm:fr_temperature")
FileVectorOptionKey const	ev_map ("cm:ev_map")
FileVectorOptionKey const	hh_map ("cm:hh_map")

Variables
BooleanOptionKey const	cm
BooleanOptionKey const	start_models_only
StringOptionKey const	aln_format
BooleanOptionKey const	recover_side_chains
FileVectorOptionKey const	steal_extra_residues
StringOptionKey const	loop_mover
IntegerOptionKey const	loop_close_level
IntegerOptionKey const	min_loop_size
IntegerOptionKey const	max_loop_rebuild
RealOptionKey const	loop_rebuild_filter
RealOptionKey const	aln_length_filter_quantile
IntegerOptionKey const	aln_length_filter
StringVectorOptionKey const	template_ids
FileOptionKey const	ligand_pdb
StringVectorOptionKey const	seq_score
StringOptionKey const	aligner
RealOptionKey const	min_gap_open
RealOptionKey const	max_gap_open
RealOptionKey const	min_gap_extend
RealOptionKey const	max_gap_extend
IntegerOptionKey const	nn
RealOptionKey const	fr_temperature
FileVectorOptionKey const	ev_map
FileVectorOptionKey const	hh_map

Function Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner

(

"cm:aligner"

)

StringOptionKey const basic::options::OptionKeys::cm::aln_format

(

"cm:aln_format"

)

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter

(

"cm:aln_length_filter"

)

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile

(

"cm:aln_length_filter_quantile"

)

BooleanOptionKey const basic::options::OptionKeys::cm::cm

(

"cm"

)

FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map

(

"cm:ev_map"

)

RealOptionKey const basic::options::OptionKeys::cm::fr_temperature

(

"cm:fr_temperature"

)

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map

(

"cm:hh_map"

)

FileOptionKey const basic::options::OptionKeys::cm::ligand_pdb

(

"cm:ligand_pdb"

)

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level

(

"cm:loop_close_level"

)

StringOptionKey const basic::options::OptionKeys::cm::loop_mover

(

"cm:loop_mover"

)

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter

(

"cm:loop_rebuild_filter"

)

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend

(

"cm:max_gap_extend"

)

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open

(

"cm:max_gap_open"

)

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild

(

"cm:max_loop_rebuild"

)

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend

(

"cm:min_gap_extend"

)

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open

(

"cm:min_gap_open"

)

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size

(

"cm:min_loop_size"

)

IntegerOptionKey const basic::options::OptionKeys::cm::nn

(

"cm:nn"

)

BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains

(

"cm:recover_side_chains"

)

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score

(

"cm:seq_score"

)

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only

(

"cm:start_models_only"

)

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues

(

"cm:steal_extra_residues"

)

StringVectorOptionKey const basic::options::OptionKeys::cm::template_ids

(

"cm:template_ids"

)

Variable Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner("cm:aligner")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::cm::aln_format("cm:aln_format")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter("cm:aln_length_filter")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile("cm:aln_length_filter_quantile")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::cm::cm("cm")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map("cm:ev_map")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::fr_temperature("cm:fr_temperature")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map("cm:hh_map")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::cm::ligand_pdb("cm:ligand_pdb")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level("cm:loop_close_level")

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::cm::loop_mover("cm:loop_mover")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter("cm:loop_rebuild_filter")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend("cm:max_gap_extend")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open("cm:max_gap_open")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild("cm:max_loop_rebuild")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend("cm:min_gap_extend")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open("cm:min_gap_open")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size("cm:min_loop_size")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::cm::nn("cm:nn")

Referenced by add_rosetta_options_2(), numeric::linear_algebra::qzval(), and numeric::linear_algebra::qzvec().

BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains("cm:recover_side_chains")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score("cm:seq_score")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only("cm:start_models_only")

Referenced by add_rosetta_options_2().

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues("cm:steal_extra_residues")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::cm::template_ids("cm:template_ids")

Referenced by add_rosetta_options_2().