basic::options::OptionKeys::hotspot Namespace Reference

Functions
BooleanOptionKey const	hotspot ("hotspot")
BooleanOptionKey const	allow_gly ("hotspot:allow_gly")
BooleanOptionKey const	allow_proline ("hotspot:allow_proline")
BooleanOptionKey const	benchmark ("hotspot:benchmark")
StringVectorOptionKey const	residue ("hotspot:residue")
FileOptionKey const	hashfile ("hotspot:hashfile")
FileOptionKey const	target ("hotspot:target")
IntegerOptionKey const	target_res ("hotspot:target_res")
RealOptionKey const	target_dist ("hotspot:target_dist")
FileOptionKey const	density ("hotspot:density")
FileOptionKey const	weighted_density ("hotspot:weighted_density")
FileOptionKey const	rms_target ("hotspot:rms_target")
FileOptionKey const	rms_hotspot ("hotspot:rms_hotspot")
IntegerOptionKey const	rms_hotspot_res ("hotspot:rms_hotspot_res")
BooleanOptionKey const	rescore ("hotspot:rescore")
RealOptionKey const	threshold ("hotspot:threshold")
BooleanOptionKey const	sc_only ("hotspot:sc_only")
BooleanOptionKey const	fxnal_group ("hotspot:fxnal_group")
BooleanOptionKey const	cluster ("hotspot:cluster")
BooleanOptionKey const	colonyE ("hotspot:colonyE")
IntegerOptionKey const	length ("hotspot:length")
BooleanOptionKey const	envhb ("hotspot:envhb")
RealOptionKey const	angle ("hotspot:angle")
IntegerOptionKey const	angle_res ("hotspot:angle_res")

Variables
BooleanOptionKey const	hotspot
BooleanOptionKey const	allow_gly
BooleanOptionKey const	allow_proline
BooleanOptionKey const	benchmark
StringVectorOptionKey const	residue
FileOptionKey const	hashfile
FileOptionKey const	target
IntegerOptionKey const	target_res
RealOptionKey const	target_dist
FileOptionKey const	density
FileOptionKey const	weighted_density
FileOptionKey const	rms_target
FileOptionKey const	rms_hotspot
IntegerOptionKey const	rms_hotspot_res
BooleanOptionKey const	rescore
RealOptionKey const	threshold
BooleanOptionKey const	sc_only
BooleanOptionKey const	fxnal_group
BooleanOptionKey const	cluster
BooleanOptionKey const	colonyE
IntegerOptionKey const	length
BooleanOptionKey const	envhb
RealOptionKey const	angle
IntegerOptionKey const	angle_res

Function Documentation

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_gly

(

"hotspot:allow_gly"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_proline

(

"hotspot:allow_proline"

)

RealOptionKey const basic::options::OptionKeys::hotspot::angle

(

"hotspot:angle"

)

IntegerOptionKey const basic::options::OptionKeys::hotspot::angle_res

(

"hotspot:angle_res"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::benchmark

(

"hotspot:benchmark"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::cluster

(

"hotspot:cluster"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::colonyE

(

"hotspot:colonyE"

)

FileOptionKey const basic::options::OptionKeys::hotspot::density

(

"hotspot:density"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::envhb

(

"hotspot:envhb"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::fxnal_group

(

"hotspot:fxnal_group"

)

FileOptionKey const basic::options::OptionKeys::hotspot::hashfile

(

"hotspot:hashfile"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::hotspot

(

"hotspot"

)

IntegerOptionKey const basic::options::OptionKeys::hotspot::length

(

"hotspot:length"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::rescore

(

"hotspot:rescore"

)

StringVectorOptionKey const basic::options::OptionKeys::hotspot::residue

(

"hotspot:residue"

)

FileOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot

(

"hotspot:rms_hotspot"

)

IntegerOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot_res

(

"hotspot:rms_hotspot_res"

)

FileOptionKey const basic::options::OptionKeys::hotspot::rms_target

(

"hotspot:rms_target"

)

BooleanOptionKey const basic::options::OptionKeys::hotspot::sc_only

(

"hotspot:sc_only"

)

FileOptionKey const basic::options::OptionKeys::hotspot::target

(

"hotspot:target"

)

RealOptionKey const basic::options::OptionKeys::hotspot::target_dist

(

"hotspot:target_dist"

)

IntegerOptionKey const basic::options::OptionKeys::hotspot::target_res

(

"hotspot:target_res"

)

RealOptionKey const basic::options::OptionKeys::hotspot::threshold

(

"hotspot:threshold"

)

FileOptionKey const basic::options::OptionKeys::hotspot::weighted_density

(

"hotspot:weighted_density"

)

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_gly("hotspot:allow_gly")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::allow_proline("hotspot:allow_proline")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::hotspot::angle("hotspot:angle")

Referenced by add_rosetta_options_2(), numeric::angle_degrees(), numeric::angle_radians(), numeric::conversions::degrees(), numeric::dihedral_radians(), numeric::conversions::from_degrees(), numeric::conversions::from_radians(), numeric::proj_angl(), numeric::conversions::radians(), numeric::kinematic_closure::test_bondangle(), numeric::conversions::to_degrees(), numeric::conversions::to_radians(), numeric::wrap_2pi(), and numeric::wrap_360().

IntegerOptionKey const basic::options::OptionKeys::hotspot::angle_res("hotspot:angle_res")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::benchmark("hotspot:benchmark")

Referenced by add_rosetta_options_0(), and add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::cluster("hotspot:cluster")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::colonyE("hotspot:colonyE")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::hotspot::density("hotspot:density")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::envhb("hotspot:envhb")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::fxnal_group("hotspot:fxnal_group")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::hotspot::hashfile("hotspot:hashfile")

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::hotspot("hotspot")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::hotspot::length("hotspot:length")

Referenced by add_rosetta_options_2(), and utility::encode6bit().

BooleanOptionKey const basic::options::OptionKeys::hotspot::rescore("hotspot:rescore")

Referenced by add_rosetta_options_2().

StringVectorOptionKey const basic::options::OptionKeys::hotspot::residue("hotspot:residue")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot("hotspot:rms_hotspot")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::hotspot::rms_hotspot_res("hotspot:rms_hotspot_res")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::hotspot::rms_target("hotspot:rms_target")

Referenced by add_rosetta_options_1(), and add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::hotspot::sc_only("hotspot:sc_only")

Referenced by add_rosetta_options_2().

FileOptionKey const basic::options::OptionKeys::hotspot::target("hotspot:target")

Referenced by add_rosetta_options_2(), utility::graph::breadth_first_visit_prune(), utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::gray_target(), utility::graph::RingDetection< Graph >::Initialize(), utility::graph::RingDetection< Graph >::LengthOfSmallestCycleWithVertex(), and utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >::tree_edge().

RealOptionKey const basic::options::OptionKeys::hotspot::target_dist("hotspot:target_dist")

Referenced by add_rosetta_options_2().

IntegerOptionKey const basic::options::OptionKeys::hotspot::target_res("hotspot:target_res")

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::hotspot::threshold("hotspot:threshold")

Referenced by add_rosetta_options_2(), fasterlambertw(), and fastlambertw().

FileOptionKey const basic::options::OptionKeys::hotspot::weighted_density("hotspot:weighted_density")

Referenced by add_rosetta_options_2().