basic::options::OptionKeys::stepwise::protein Namespace Reference

Variables
BooleanOptionKey const	protein ("stepwise:protein")
BooleanOptionKey const	global_optimize ("stepwise:protein:global_optimize")
BooleanOptionKey const	disallow_backbone_sampling ("stepwise:protein:disallow_backbone_sampling")
BooleanOptionKey const	disable_sampling_of_loop_takeoff ("stepwise:protein:disable_sampling_of_loop_takeoff")
BooleanOptionKey const	dump ("stepwise:protein:dump")
BooleanOptionKey const	sample_beta ("stepwise:protein:sample_beta")
BooleanOptionKey const	ghost_loops ("stepwise:protein:ghost_loops")
BooleanOptionKey const	rescore_only ("stepwise:protein:rescore_only")
StringOptionKey const	min_type ("stepwise:protein:min_type")
RealOptionKey const	min_tolerance ("stepwise:protein:min_tolerance")
BooleanOptionKey const	centroid_screen ("stepwise:protein:centroid_screen")
RealOptionKey const	centroid_score_diff_cut ("stepwise:protein:centroid_score_diff_cut")
BooleanOptionKey const	skip_minimize ("stepwise:protein:skip_minimize")
StringOptionKey const	centroid_weights ("stepwise:protein:centroid_weights")
RealOptionKey const	score_diff_cut ("stepwise:protein:score_diff_cut")
BooleanOptionKey const	filter_native_big_bins ("stepwise:protein:filter_native_big_bins")
BooleanOptionKey const	cluster_by_all_atom_rmsd ("stepwise:protein:cluster_by_all_atom_rmsd")
BooleanOptionKey const	centroid_output ("stepwise:protein:centroid_output")
IntegerOptionKey const	n_sample ("stepwise:protein:n_sample")
IntegerOptionKey const	nstruct_centroid ("stepwise:protein:nstruct_centroid")
BooleanOptionKey const	ccd_close ("stepwise:protein:ccd_close")
IntegerVectorOptionKey const	bridge_res ("stepwise:protein:bridge_res")
RealOptionKey const	rmsd_screen ("stepwise:protein:rmsd_screen")
BooleanOptionKey const	cart_min ("stepwise:protein:cart_min")
BooleanOptionKey const	move_jumps_between_chains ("stepwise:protein:move_jumps_between_chains")
BooleanOptionKey const	use_packer_instead_of_rotamer_trials ("stepwise:protein:use_packer_instead_of_rotamer_trials")
BooleanOptionKey const	expand_loop_takeoff ("stepwise:protein:expand_loop_takeoff")
BooleanOptionKey const	skip_coord_constraints ("stepwise:protein:skip_coord_constraints")
BooleanOptionKey const	allow_virtual_side_chains ("stepwise:protein:allow_virtual_side_chains")
BooleanOptionKey const	protein_prepack ("stepwise:protein:protein_prepack")
BooleanOptionKey const	protein_atr_rep_screen ("stepwise:protein:protein_atr_rep_screen")

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::allow_virtual_side_chains

Referenced by add_rosetta_options_3().

IntegerVectorOptionKey const basic::options::OptionKeys::stepwise::protein::bridge_res

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::cart_min

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::ccd_close

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_output

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_score_diff_cut

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_screen

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::stepwise::protein::centroid_weights

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::cluster_by_all_atom_rmsd

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::disable_sampling_of_loop_takeoff

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::disallow_backbone_sampling

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::dump

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::expand_loop_takeoff

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::filter_native_big_bins

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::ghost_loops

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::global_optimize

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::stepwise::protein::min_tolerance

Referenced by add_rosetta_options_3().

StringOptionKey const basic::options::OptionKeys::stepwise::protein::min_type

Referenced by add_rosetta_options_1(), add_rosetta_options_2(), and add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::move_jumps_between_chains

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::stepwise::protein::n_sample

Referenced by add_rosetta_options_3().

IntegerOptionKey const basic::options::OptionKeys::stepwise::protein::nstruct_centroid

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::protein

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::protein_atr_rep_screen

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::protein_prepack

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::rescore_only

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::stepwise::protein::rmsd_screen

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::sample_beta

Referenced by add_rosetta_options_3().

RealOptionKey const basic::options::OptionKeys::stepwise::protein::score_diff_cut

Referenced by add_rosetta_options_1(), and add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::skip_coord_constraints

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::skip_minimize

Referenced by add_rosetta_options_3().

BooleanOptionKey const basic::options::OptionKeys::stepwise::protein::use_packer_instead_of_rotamer_trials

Referenced by add_rosetta_options_3().