stepwise::protein Namespace Reference

Functions
BooleanOptionKey const	protein ("stepwise:protein")
BooleanOptionKey const	global_optimize ("stepwise:protein:global_optimize")
BooleanOptionKey const	disallow_backbone_sampling ("stepwise:protein:disallow_backbone_sampling")
BooleanOptionKey const	disable_sampling_of_loop_takeoff ("stepwise:protein:disable_sampling_of_loop_takeoff")
BooleanOptionKey const	dump ("stepwise:protein:dump")
BooleanOptionKey const	sample_beta ("stepwise:protein:sample_beta")
BooleanOptionKey const	ghost_loops ("stepwise:protein:ghost_loops")
BooleanOptionKey const	rescore_only ("stepwise:protein:rescore_only")
StringOptionKey const	min_type ("stepwise:protein:min_type")
RealOptionKey const	min_tolerance ("stepwise:protein:min_tolerance")
BooleanOptionKey const	centroid_screen ("stepwise:protein:centroid_screen")
RealOptionKey const	centroid_score_diff_cut ("stepwise:protein:centroid_score_diff_cut")
BooleanOptionKey const	skip_minimize ("stepwise:protein:skip_minimize")
StringOptionKey const	centroid_weights ("stepwise:protein:centroid_weights")
RealOptionKey const	score_diff_cut ("stepwise:protein:score_diff_cut")
BooleanOptionKey const	filter_native_big_bins ("stepwise:protein:filter_native_big_bins")
BooleanOptionKey const	cluster_by_all_atom_rmsd ("stepwise:protein:cluster_by_all_atom_rmsd")
BooleanOptionKey const	centroid_output ("stepwise:protein:centroid_output")
IntegerOptionKey const	n_sample ("stepwise:protein:n_sample")
IntegerOptionKey const	nstruct_centroid ("stepwise:protein:nstruct_centroid")
BooleanOptionKey const	ccd_close ("stepwise:protein:ccd_close")
IntegerVectorOptionKey const	bridge_res ("stepwise:protein:bridge_res")
RealOptionKey const	rmsd_screen ("stepwise:protein:rmsd_screen")
BooleanOptionKey const	cart_min ("stepwise:protein:cart_min")
BooleanOptionKey const	move_jumps_between_chains ("stepwise:protein:move_jumps_between_chains")
BooleanOptionKey const	use_packer_instead_of_rotamer_trials ("stepwise:protein:use_packer_instead_of_rotamer_trials")
BooleanOptionKey const	expand_loop_takeoff ("stepwise:protein:expand_loop_takeoff")
BooleanOptionKey const	skip_coord_constraints ("stepwise:protein:skip_coord_constraints")
BooleanOptionKey const	allow_virtual_side_chains ("stepwise:protein:allow_virtual_side_chains")
BooleanOptionKey const	protein_prepack ("stepwise:protein:protein_prepack")
BooleanOptionKey const	protein_atr_rep_screen ("stepwise:protein:protein_atr_rep_screen")

Function Documentation

BooleanOptionKey const stepwise::protein::allow_virtual_side_chains

(

"stepwise:protein:allow_virtual_side_chains"

)

IntegerVectorOptionKey const stepwise::protein::bridge_res

(

"stepwise:protein:bridge_res"

)

BooleanOptionKey const stepwise::protein::cart_min

(

"stepwise:protein:cart_min"

)

BooleanOptionKey const stepwise::protein::ccd_close

(

"stepwise:protein:ccd_close"

)

BooleanOptionKey const stepwise::protein::centroid_output

(

"stepwise:protein:centroid_output"

)

RealOptionKey const stepwise::protein::centroid_score_diff_cut

(

"stepwise:protein:centroid_score_diff_cut"

)

BooleanOptionKey const stepwise::protein::centroid_screen

(

"stepwise:protein:centroid_screen"

)

StringOptionKey const stepwise::protein::centroid_weights

(

"stepwise:protein:centroid_weights"

)

BooleanOptionKey const stepwise::protein::cluster_by_all_atom_rmsd

(

"stepwise:protein:cluster_by_all_atom_rmsd"

)

BooleanOptionKey const stepwise::protein::disable_sampling_of_loop_takeoff

(

"stepwise:protein:disable_sampling_of_loop_takeoff"

)

BooleanOptionKey const stepwise::protein::disallow_backbone_sampling

(

"stepwise:protein:disallow_backbone_sampling"

)

BooleanOptionKey const stepwise::protein::dump

(

"stepwise:protein:dump"

)

BooleanOptionKey const stepwise::protein::expand_loop_takeoff

(

"stepwise:protein:expand_loop_takeoff"

)

BooleanOptionKey const stepwise::protein::filter_native_big_bins

(

"stepwise:protein:filter_native_big_bins"

)

BooleanOptionKey const stepwise::protein::ghost_loops

(

"stepwise:protein:ghost_loops"

)

BooleanOptionKey const stepwise::protein::global_optimize

(

"stepwise:protein:global_optimize"

)

RealOptionKey const stepwise::protein::min_tolerance

(

"stepwise:protein:min_tolerance"

)

StringOptionKey const stepwise::protein::min_type

(

"stepwise:protein:min_type"

)

BooleanOptionKey const stepwise::protein::move_jumps_between_chains

(

"stepwise:protein:move_jumps_between_chains"

)

IntegerOptionKey const stepwise::protein::n_sample

(

"stepwise:protein:n_sample"

)

IntegerOptionKey const stepwise::protein::nstruct_centroid

(

"stepwise:protein:nstruct_centroid"

)

BooleanOptionKey const stepwise::protein::protein

(

"stepwise:protein"

)

BooleanOptionKey const stepwise::protein::protein_atr_rep_screen

(

"stepwise:protein:protein_atr_rep_screen"

)

BooleanOptionKey const stepwise::protein::protein_prepack

(

"stepwise:protein:protein_prepack"

)

BooleanOptionKey const stepwise::protein::rescore_only

(

"stepwise:protein:rescore_only"

)

RealOptionKey const stepwise::protein::rmsd_screen

(

"stepwise:protein:rmsd_screen"

)

BooleanOptionKey const stepwise::protein::sample_beta

(

"stepwise:protein:sample_beta"

)

RealOptionKey const stepwise::protein::score_diff_cut

(

"stepwise:protein:score_diff_cut"

)

BooleanOptionKey const stepwise::protein::skip_coord_constraints

(

"stepwise:protein:skip_coord_constraints"

)

BooleanOptionKey const stepwise::protein::skip_minimize

(

"stepwise:protein:skip_minimize"

)

BooleanOptionKey const stepwise::protein::use_packer_instead_of_rotamer_trials

(

"stepwise:protein:use_packer_instead_of_rotamer_trials"

)