- h -

• h1_template() : antibody , basic::options::OptionKeys::antibody
• h2_template() : antibody , basic::options::OptionKeys::antibody
• h3_filter() : antibody , basic::options::OptionKeys::antibody
• h3_filter_tolerance() : antibody , basic::options::OptionKeys::antibody
• h3_no_stem_graft() : antibody , basic::options::OptionKeys::antibody
• h3_template() : antibody , basic::options::OptionKeys::antibody
• h_mode() : basic::options::OptionKeys::holes , holes
• handles_metric_value() : basic
• harmonic_ca_tether() : basic::options::OptionKeys::ddg , ddg
• harmonic_Calphas() : basic::options::OptionKeys::docking::ligand , docking::ligand
• harmonic_torsions() : basic::options::OptionKeys::docking::ligand , docking::ligand
• Haro() : orbitals
• harvest_motifs() : basic::options::OptionKeys::mh , mh
• harvest_motifs_min_hh_ends() : basic::options::OptionKeys::mh , mh
• harvest_scores() : basic::options::OptionKeys::mh , mh
• harvest_scores_min_count() : basic::options::OptionKeys::mh , mh
• has_value() : utility::json_spirit
• hash_2D_vs_3D() : sicdock
• hash_angle_resl() : basic::options::OptionKeys::mh , mh
• hash_cart_resl() : basic::options::OptionKeys::mh , mh
• hash_cart_size() : basic::options::OptionKeys::mh , mh
• hash_value() : numeric
• hashfile() : basic::options::OptionKeys::hotspot , hotspot
• hb_bb() : basic::options::OptionKeys::mh::filter , mh::filter
• hb_bb_sc() : basic::options::OptionKeys::mh::filter , mh::filter
• hb_elec() : basic::options::OptionKeys::chrisk , chrisk
• hb_fade_energy() : basic::options::OptionKeys::corrections::score , corrections::score
• hb_filter() : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• hb_lrbb() : remodel
• hb_sc() : basic::options::OptionKeys::mh::filter , mh::filter
• hb_score_cutoff() : basic::options::OptionKeys::motifs , motifs
• hb_sp2_BAH180_rise() : basic::options::OptionKeys::corrections::score , corrections::score
• hb_sp2_chipen() : basic::options::OptionKeys::corrections::score , corrections::score
• hb_sp2_outer_width() : basic::options::OptionKeys::corrections::score , corrections::score
• hb_srbb() : remodel
• hbond_disable_bbsc_exclusion_rule() : score
• hbond_energy_shift() : basic::options::OptionKeys::corrections::score , corrections::score
• hbond_His_Phil_fix() : basic::options::OptionKeys::corrections::score , corrections::score
• hbond_max_threshold() : basic::options::OptionKeys::motifs , motifs
• hbond_measure_sp3acc_BAH_from_hvy() : basic::options::OptionKeys::corrections::score , corrections::score
• hbond_min_threshold() : basic::options::OptionKeys::motifs , motifs
• hbond_params() : score
• hbond_sp2_correction() : basic::options::OptionKeys::corrections , corrections
• HD_EX_Info() : abinitio , basic::options::OptionKeys::abinitio
• HD_fa_penalty() : abinitio , basic::options::OptionKeys::abinitio
• HD_penalty() : abinitio , basic::options::OptionKeys::abinitio
• HDX() : basic::options::OptionKeys::in::file , in::file
• heat_convergence_check() : basic::options::OptionKeys::mc , mc
• helical_movement_params() : RBSegmentRelax
• helical_omega() : remodel
• helical_radius() : remodel
• helical_rise() : remodel
• helices_to_add() : sewing
• helix_cap_dist_cutoff() : sewing
• helix_contact_dist_cutoff() : sewing
• helix_hb_06_2009() : basic::options::OptionKeys::corrections::score , corrections::score
• helix_pair_rmsd_cutoff() : sewing
• helix_pairings() : templates
• help() : remodel
• helper() : numeric::deriv
• hex_str_to_char() : utility::json_spirit
• hex_to_num() : utility::json_spirit
• hh_map() : basic::options::OptionKeys::cm , cm
• hierarchical_max_cache_size() : basic::options::OptionKeys::canonical_sampling::probabilities , canonical_sampling::probabilities
• hierarchical_pool() : basic::options::OptionKeys::mc , mc
• high_min_patch() : basic::options::OptionKeys::docking , docking
• high_patch() : basic::options::OptionKeys::docking , docking
• holes() : basic::options::OptionKeys::holes , holes
• homo_file() : basic::options::OptionKeys::lh , lh
• homodimer() : willmatch
• homol_csts() : pepspec
• host() : basic::options::OptionKeys::inout::dbms , inout::dbms
• hotspot() : basic::options::OptionKeys::hotspot , hotspot
• hotspot_filter() : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• hotspot_hash() : basic::options::OptionKeys::cluster , cluster
• Hpol() : orbitals
• hr_intersects_hs() : numeric::kdtree
• hsv_to_rgb() : numeric
• hxl_dist_cutoff() : basic::options::OptionKeys::bunsat_calc2 , bunsat_calc2
• hybridize() : basic::options::OptionKeys::cm::hybridize , cm::hybridize
• hydrophobic_polar_pattern() : basic::options::OptionKeys::DenovoProteinDesign , DenovoProteinDesign
• hyper_tan() : numeric::kinematic_closure