- t -

• t() : basic::options::OptionKeys::in::file
• T() : basic
• t() : in::file
• table_exists() : basic::database
• taboo_in_fa() : basic::options::OptionKeys::loops , loops
• taboo_sampling() : basic::options::OptionKeys::loops , loops
• tag() : basic::options::OptionKeys::matdes , matdes , resample , rot_anl
• tagfile() : basic::options::OptionKeys::in::file , in::file
• taglist() : willmatch
• tags() : basic::options::OptionKeys::in::file , in::file
• tags1() : stepwise
• tags2() : stepwise
• tail_mode() : basic::options::OptionKeys::krassk , krassk
• tail_mode_name() : basic::options::OptionKeys::krassk , krassk
• tail_output_file_name() : basic::options::OptionKeys::krassk , krassk
• talos_cs() : basic::options::OptionKeys::in::file , in::file
• talos_phi_psi() : basic::options::OptionKeys::in::file , in::file
• target() : basic::options::OptionKeys::hotspot , hotspot
• target_aa() : basic::options::OptionKeys::motifs , motifs
• target_dist() : basic::options::OptionKeys::hotspot , hotspot
• target_dna_defs() : basic::options::OptionKeys::motifs , motifs
• target_res() : basic::options::OptionKeys::hotspot , hotspot
• target_residues() : basic::options::OptionKeys::in , in
• targetdir() : basic::options::OptionKeys::evolution , evolution
• temp_final() : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temp_initial() : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temperature() : abinitio , basic::options::OptionKeys::abinitio , basic::options::OptionKeys::ddg , basic::options::OptionKeys::docking , ddg , docking , remodel::RemodelLoopMover , rigid , smhybrid , stepwise::monte_carlo
• template_ids() : basic::options::OptionKeys::cm , cm
• template_list() : basic::options::OptionKeys::cm::hybridize , cm::hybridize
• template_pdb() : basic::options::OptionKeys::in::file , in::file
• template_scores() : basic::options::OptionKeys::cluster , cluster
• template_silent() : basic::options::OptionKeys::in::file , in::file
• templates() : basic::options::OptionKeys::cm::hybridize , cm::hybridize , templates
• tensor_weight() : rdc
• term_max_angle() : sicdock
• term_min_expose() : sicdock
• terminal_res() : stepwise::rna
• test_bondangle() : numeric::kinematic_closure
• test_bridgeObjects() : numeric::kinematic_closure
• test_chainParams() : numeric::kinematic_closure
• test_chainTORS() : numeric::kinematic_closure
• test_chainXYZ() : numeric::kinematic_closure
• test_cross() : numeric::kinematic_closure
• test_crossp() : numeric::kinematic_closure
• test_cycles() : run
• test_det_3() : numeric::kinematic_closure
• test_dixon() : numeric::kinematic_closure
• test_encapsulation() : stepwise
• test_eucDistance() : numeric::kinematic_closure
• test_frame() : numeric::kinematic_closure
• test_kic_jac() : numeric::kinematic_closure
• test_normalize() : numeric::kinematic_closure
• test_point_value2() : numeric::kinematic_closure
• test_polyProduct2x2() : numeric::kinematic_closure
• test_polyProduct4sq() : numeric::kinematic_closure
• test_polyProduct4x2() : numeric::kinematic_closure
• test_polyProduct4x4() : numeric::kinematic_closure
• test_polyProduct6x6() : numeric::kinematic_closure
• test_rotateX() : numeric::kinematic_closure
• test_scpn() : numeric::kinematic_closure
• test_sincos() : numeric::kinematic_closure
• test_torsion() : numeric::kinematic_closure
• test_triangle() : numeric::kinematic_closure
• test_triaxialCoefficients() : numeric::kinematic_closure
• testing() : AnchoredDesign::testing , basic::options::OptionKeys::AnchoredDesign::testing
• tether_jump() : stepwise::rna
• tether_ligand() : basic::options::OptionKeys::docking::ligand , docking::ligand
• tf() : basic::options::OptionKeys::dna::specificity , dna::specificity
• thickness() : basic::options::OptionKeys::membrane , membrane
• thinout_factor() : basic::options::OptionKeys::cluster , cluster
• thorough() : relax
• thread_unaligned() : basic::options::OptionKeys::james , james
• threads() : basic::options::OptionKeys::gpu , gpu , packstat
• threadsc() : threadsc
• threshold() : basic::options::OptionKeys::hotspot , hotspot
• throw_error() : utility::json_spirit
• timer() : basic::options::OptionKeys::loops , loops , run
• timestamp() : utility
• timestamp_short() : utility
• to_degrees() : numeric::conversions , numeric::kinematic_closure::radians
• to_hex_char() : utility::json_spirit
• to_radians() : numeric::conversions , numeric::kinematic_closure::radians
• to_str() : utility::json_spirit
• to_string() : utility
• token_type_name() : numeric::expression_parser
• top_graft_designs() : antibody::design , basic::options::OptionKeys::antibody::design
• topN() : templates::cst , templates::fragsteal
• topology_file() : basic::options::OptionKeys::jumps , jumps
• topology_rank_cutoff() : templates
• torsion() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• torsion_bin_probs() : basic::options::OptionKeys::in::file , in::file
• torsion_thresholds() : basic::options::OptionKeys::james , james
• torsionsMCM() : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• total_weight() : rdc
• traj_per_master() : basic::options::OptionKeys::els , els
• trajectory() : run
• trans_mag_smooth() : basic::options::OptionKeys::fold_and_dock , fold_and_dock
• trans_magnitude() : basic::options::OptionKeys::enzdes , enzdes
• transaction_mode_from_name() : utility::sql_database
• transform_percentile() : numeric::kdtree
• transform_percentile_single_pt() : numeric::kdtree
• transition_threshold() : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• translate_by() : basic::options::OptionKeys::ddg , ddg
• translation() : rigid
• transpose_product() : numeric
• treat_residues_in_these_chains_as_separate_chemical_entities() : basic::options::OptionKeys::in::file , in::file
• trg_anchor() : threadsc
• trg_chain() : threadsc
• trg_first_resid() : threadsc
• triangle() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triaxialCoefficients() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• trim() : utility
• trim_proportion() : wum
• trimmed_compare() : utility
• truefalseoption() : basic::options
• truncate_and_serialize_xyz_vector() : numeric
• trytry_ifstream_open() : utility::file
• trytry_ofstream_open() : utility::file
• turn_conservation() : antibody::design , basic::options::OptionKeys::antibody::design
• tweak_sxfn() : basic::options::OptionKeys::docking::ligand , docking::ligand
• two_body() : rotamerdump
• two_chain_tree() : remodel
• two_ubiquitins() : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• type() : basic::options::OptionKeys::frags::contacts , frags::contacts