Here is a list of all namespace members with links to the namespace documentation for each member:

- j -

• j : basic::options::OptionKeys::frags , frags
• jacobi() : numeric
• jacobi_rotation() : numeric
• james() : basic::options::OptionKeys::james , james
• james_debug : options
• JD2 : basic
• jd2 : basic::options::OptionKeys::jd2 , jd2
• JD2_INIT_MOVER : basic
• JD2_OUTPUT : basic
• JD2_SILENT_OUTPUTTER : basic
• jdist_rerun() : abinitio , basic::options::OptionKeys::abinitio
• job_queue_ID : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• jobdist_miscfile_ext : basic::options::OptionKeys::run , run
• jobname : basic::options::OptionKeys::lh , lh
• JobOptionsCOP : basic::resource_manager
• JobOptionsOP : basic::resource_manager
• JobTag : basic::resource_manager
• join() : utility
• jran : basic::options::OptionKeys::run , run
• jscore_evaluator : basic::options::OptionKeys::evaluation , evaluation
• JsonEmitterCOP : basic
• JsonEmitterOP : basic
• jump_database : basic::options::OptionKeys::rna , rna
• jump_lib() : basic::options::OptionKeys::jumps , jumps
• jump_move : basic::options::OptionKeys::relax , relax
• jump_nr : basic::options::OptionKeys::evaluation , evaluation
• jump_point_pairs : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• jump_res : basic::options::OptionKeys::full_model , full_model
• jumpcut_files : basic::options::OptionKeys::smhybrid , smhybrid
• jumping() : basic::options::OptionKeys::cmiles::jumping , cmiles::jumping
• jumps() : basic::options::OptionKeys::jumps , basic::options::OptionKeys::resample , jumps , resample
• just_calc_rmsd : basic::options::OptionKeys::score , score
• just_min_after_mutation_frequency : basic::options::OptionKeys::stepwise::monte_carlo , stepwise::monte_carlo