Here is a list of all namespace members with links to the namespace documentation for each member:

- t -

• t : basic::options::OptionKeys::in::file
• T() : basic
• t() : in::file
• t_debug : basic
• t_error : basic
• t_fatal : basic
• t_info : basic
• t_trace : basic
• t_warning : basic
• table : utility::options::OptionKeys::options::table
• table_exists() : basic::database
• taboo_in_fa : basic::options::OptionKeys::loops , loops
• taboo_sampling : basic::options::OptionKeys::loops , loops
• tag : basic::options::OptionKeys::matdes , basic::options::OptionKeys::resample , basic::options::OptionKeys::rot_anl , matdes , resample , rot_anl
• tag2string : basic
• TagCOP : utility::tag
• tagfile : basic::options::OptionKeys::in::file , in::file
• taglist : basic::options::OptionKeys::willmatch , willmatch
• TagOP : utility::tag
• TagPtr : utility::tag
• tags : basic::options::OptionKeys::in::file , in::file
• tags1 : basic::options::OptionKeys::stepwise , stepwise
• tags2 : basic::options::OptionKeys::stepwise , stepwise
• tail_mode : basic::options::OptionKeys::krassk , krassk
• tail_mode_name : basic::options::OptionKeys::krassk , krassk
• tail_output_file_name : basic::options::OptionKeys::krassk , krassk
• talos_cs : basic::options::OptionKeys::in::file , in::file
• talos_phi_psi : basic::options::OptionKeys::in::file , in::file
• target : basic::options::OptionKeys::hotspot , hotspot
• target_aa : basic::options::OptionKeys::motifs , motifs
• target_dist() : basic::options::OptionKeys::hotspot , hotspot
• target_dna_defs : basic::options::OptionKeys::motifs , motifs
• target_res : basic::options::OptionKeys::hotspot , hotspot
• target_residues : basic::options::OptionKeys::in , in
• targetdir : basic::options::OptionKeys::evolution , evolution
• temp_final : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temp_initial : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temperature() : abinitio , basic::options::OptionKeys::abinitio , basic::options::OptionKeys::ddg , basic::options::OptionKeys::docking , basic::options::OptionKeys::remodel::RemodelLoopMover , basic::options::OptionKeys::rigid , basic::options::OptionKeys::smhybrid , basic::options::OptionKeys::stepwise::monte_carlo , ddg , docking , remodel::RemodelLoopMover , rigid , smhybrid , stepwise::monte_carlo
• template_ids : basic::options::OptionKeys::cm , cm
• template_list : basic::options::OptionKeys::cm::hybridize , cm::hybridize
• template_pdb : basic::options::OptionKeys::in::file , in::file
• template_scores : basic::options::OptionKeys::cluster , cluster
• template_silent : basic::options::OptionKeys::in::file , in::file
• templates : basic::options::OptionKeys::cm::hybridize , basic::options::OptionKeys::templates , cm::hybridize , templates
• tensor_weight : basic::options::OptionKeys::rdc , rdc
• term_max_angle : basic::options::OptionKeys::sicdock , sicdock
• term_min_expose : basic::options::OptionKeys::sicdock , sicdock
• terminal_res : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• TEST1 : basic
• TEST2 : basic
• TEST3 : basic
• TEST4 : basic
• TEST5 : basic
• test_bondangle() : numeric::kinematic_closure
• test_bridgeObjects() : numeric::kinematic_closure
• test_chainParams() : numeric::kinematic_closure
• test_chainTORS() : numeric::kinematic_closure
• test_chainXYZ() : numeric::kinematic_closure
• test_cross() : numeric::kinematic_closure
• test_crossp() : numeric::kinematic_closure
• test_cycles : basic::options::OptionKeys::run , run
• test_det_3() : numeric::kinematic_closure
• test_dixon() : numeric::kinematic_closure
• test_encapsulation : basic::options::OptionKeys::stepwise , stepwise
• test_eucDistance() : numeric::kinematic_closure
• test_frame() : numeric::kinematic_closure
• test_kic_jac() : numeric::kinematic_closure
• test_normalize() : numeric::kinematic_closure
• test_point_value2() : numeric::kinematic_closure
• test_polyProduct2x2() : numeric::kinematic_closure
• test_polyProduct4sq() : numeric::kinematic_closure
• test_polyProduct4x2() : numeric::kinematic_closure
• test_polyProduct4x4() : numeric::kinematic_closure
• test_polyProduct6x6() : numeric::kinematic_closure
• test_rotateX() : numeric::kinematic_closure
• test_scpn() : numeric::kinematic_closure
• test_sincos() : numeric::kinematic_closure
• test_torsion() : numeric::kinematic_closure
• test_triangle() : numeric::kinematic_closure
• test_triaxialCoefficients() : numeric::kinematic_closure
• testing() : AnchoredDesign::testing , basic::options::OptionKeys::AnchoredDesign::testing
• tether_jump : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• tether_ligand : basic::options::OptionKeys::docking::ligand , docking::ligand
• text : utility::options::OptionKeys::options::table
• tf : basic::options::OptionKeys::dna::specificity , dna::specificity
• thickness : basic::options::OptionKeys::membrane , membrane
• thinout_factor : basic::options::OptionKeys::cluster , cluster
• thorough : basic::options::OptionKeys::relax , relax
• thread_unaligned : basic::options::OptionKeys::james , james
• threads : basic::options::OptionKeys::gpu , basic::options::OptionKeys::packstat , gpu , packstat
• threadsc : basic::options::OptionKeys::threadsc , threadsc
• threshold : basic::options::OptionKeys::hotspot , hotspot
• throw_error() : utility::json_spirit
• timer : basic::options::OptionKeys::loops , basic::options::OptionKeys::run , loops , run
• timestamp() : utility
• timestamp_short() : utility
• to_degrees() : numeric::conversions , numeric::kinematic_closure::radians
• to_hex_char() : utility::json_spirit
• to_radians() : numeric::conversions , numeric::kinematic_closure::radians
• to_str() : utility::json_spirit
• to_string() : utility
• token_type_name() : numeric::expression_parser
• TokenCOP : numeric::expression_parser
• TokenOP : numeric::expression_parser
• TokenSetCOP : numeric::expression_parser
• TokenSetOP : numeric::expression_parser
• TokenType : numeric::expression_parser
• top_graft_designs() : antibody::design , basic::options::OptionKeys::antibody::design
• topN : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal , templates::cst , templates::fragsteal
• topology_file() : basic::options::OptionKeys::jumps , jumps
• topology_rank_cutoff : basic::options::OptionKeys::templates , templates
• torsion() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• torsion_bin_probs() : basic::options::OptionKeys::in::file , in::file
• torsion_thresholds() : basic::options::OptionKeys::james , james
• torsionsMCM : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• TOTAL : basic
• total_clock : basic
• total_weight : basic::options::OptionKeys::rdc , rdc
• TR : basic::database::schema_generator , basic::database
• tr : basic::datacache
• TR : basic::datacache , basic::message_listening , basic::options , basic::resource_manager::locator , basic::resource_manager
• TR_hh : basic::datacache
• TracerPriority : basic
• Traits : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• traj_per_master() : basic::options::OptionKeys::els , els
• trajectory : basic::options::OptionKeys::run , run
• trans_mag_smooth : basic::options::OptionKeys::fold_and_dock , fold_and_dock
• trans_magnitude() : basic::options::OptionKeys::enzdes , enzdes
• transaction_mode_from_name() : utility::sql_database
• transactionCOP : utility::sql_database
• transactionOP : utility::sql_database
• transform_percentile() : numeric::kdtree
• transform_percentile_single_pt() : numeric::kdtree
• transition_threshold : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• translate_by() : basic::options::OptionKeys::ddg , ddg
• translation : basic::options::OptionKeys::rigid , rigid
• transpose_product() : numeric
• treat_residues_in_these_chains_as_separate_chemical_entities() : basic::options::OptionKeys::in::file , in::file
• trg_anchor : basic::options::OptionKeys::threadsc , threadsc
• trg_chain : basic::options::OptionKeys::threadsc , threadsc
• trg_first_resid : basic::options::OptionKeys::threadsc , threadsc
• triangle() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triaxialCoefficients() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• trim() : utility
• trim_proportion : basic::options::OptionKeys::wum , wum
• trimmed_compare() : utility
• true_negative : numeric
• true_positive : numeric
• truefalseoption() : basic::options
• truncate_and_serialize_xyz_vector() : numeric
• TRUNCATED_SCORE_EVALUATOR : basic
• trytry_ifstream_open() : utility::file
• trytry_ofstream_open() : utility::file
• turn_conservation() : antibody::design , basic::options::OptionKeys::antibody::design
• tweak_sxfn() : basic::options::OptionKeys::docking::ligand , docking::ligand
• two : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• two_body : basic::options::OptionKeys::rotamerdump , rotamerdump
• two_chain_tree : basic::options::OptionKeys::remodel , remodel
• two_ubiquitins() : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• type() : basic::options::OptionKeys::frags::contacts , frags::contacts
• Type : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r