- n -

n_anchor_dock_std_devs : basic::options::OptionKeys::pepspec
n_append : basic::options::OptionKeys::pepspec
n_build_loop : basic::options::OptionKeys::pepspec
n_candidates : basic::options::OptionKeys::frags
n_cgrelax_loop : basic::options::OptionKeys::pepspec
n_clusters : basic::options::OptionKeys::james
n_cycles : basic::options::OptionKeys::run
n_design_cycles : basic::options::OptionKeys::optE
n_designs : basic::options::OptionKeys::james
n_dock_loop : basic::options::OptionKeys::pepspec
n_frags : basic::options::OptionKeys::frags
n_inner : basic::options::OptionKeys::dna::specificity
n_kbins : basic::options::OptionKeys::edensity
n_key : basic::options::OptionKeys , utility::options::OptionKeys
n_masters : basic::options::OptionKeys::wum
n_outer : basic::options::OptionKeys::dna::specificity
n_peptides : basic::options::OptionKeys::pepspec
n_prepend : basic::options::OptionKeys::pepspec
n_rebuild_tries : basic::options::OptionKeys::loops
n_replica : basic::options::OptionKeys::run
n_sample : basic::options::OptionKeys::stepwise::protein
n_slaves_per_master : basic::options::OptionKeys::wum
n_tail_res : basic::options::OptionKeys::chemically_conjugated_docking
n_top_natives_to_optimize : basic::options::OptionKeys::optE
named : basic::options::OptionKeys::constraints
nat_ro_file : basic::options::OptionKeys::sewing
native : basic::options::OptionKeys::in::file
native1 : basic::options::OptionKeys::willmatch
native2 : basic::options::OptionKeys::willmatch
native_align : basic::options::OptionKeys::pepspec
native_alignment_res : basic::options::OptionKeys::stepwise::rna
native_ca_cst : basic::options::OptionKeys::fold_from_loops
native_contacts : basic::options::OptionKeys::in::file
native_edensity_score_cutoff : basic::options::OptionKeys::stepwise::rna
native_exclude_res : basic::options::OptionKeys::in::file
native_pep_anchor : basic::options::OptionKeys::pepspec
native_pep_chain : basic::options::OptionKeys::pepspec
native_virtual_res : basic::options::OptionKeys::stepwise::rna
nblist_autoupdate : basic::options::OptionKeys::run
nblist_autoupdate_narrow : basic::options::OptionKeys::run
nblist_autoupdate_wide : basic::options::OptionKeys::run
ncycle : basic::options::OptionKeys::flxbb
ncycles : basic::options::OptionKeys::cp
ndruns : basic::options::OptionKeys::packing
nds_prob : basic::options::OptionKeys::blivens::disulfide_scorer
neg_r : basic::options::OptionKeys::matdes::dock
neighbor_by_distance_cutoff : basic::options::OptionKeys::pose_metrics
neighbor_dis : basic::options::OptionKeys::antibody::design
neighbor_dist : basic::options::OptionKeys::loops
neighbors : basic::options::OptionKeys::frags::contacts
new_chain_order : basic::options::OptionKeys::in::file
new_structures : basic::options::OptionKeys::canonical_sampling::out
njumps : basic::options::OptionKeys::jumps
nloop : basic::options::OptionKeys::dna::specificity , basic::options::OptionKeys::phil
nloop_scmove : basic::options::OptionKeys::rot_anl
nlsrepeat : basic::options::OptionKeys::rdc
nmer_pssm : basic::options::OptionKeys::score
nmer_pssm_list : basic::options::OptionKeys::score
nmer_pssm_scorecut : basic::options::OptionKeys::score
nmer_ref_energies : basic::options::OptionKeys::score
nmer_ref_energies_list : basic::options::OptionKeys::score
nmer_ref_seq_length : basic::options::OptionKeys::score
nmer_svm : basic::options::OptionKeys::score
nmer_svm_aa_matrix : basic::options::OptionKeys::score
nmer_svm_list : basic::options::OptionKeys::score
nmer_svm_pssm_feat : basic::options::OptionKeys::score
nmer_svm_scorecut : basic::options::OptionKeys::score
nmer_svm_term_length : basic::options::OptionKeys::score
nn : basic::options::OptionKeys::cm
no_bb_movement : basic::options::OptionKeys::ddg
no_binary_dunlib : basic::options::OptionKeys::in::file
no_catres_min_in_loopgen : basic::options::OptionKeys::enzdes
no_cen : basic::options::OptionKeys::pepspec
no_cen_rottrials : basic::options::OptionKeys::pepspec
no_chainbreak_in_relax : basic::options::OptionKeys::jumps
no_combine_if_fail : basic::options::OptionKeys::loops
no_constraints : basic::options::OptionKeys::ddg
no_cst_in_relax : basic::options::OptionKeys::constraints
no_culling : basic::options::OptionKeys::templates
no_design : basic::options::OptionKeys::optE , basic::options::OptionKeys::pepspec , basic::options::OptionKeys::remodel::design
no_design_pdb_output : basic::options::OptionKeys::optE
no_detailed_balance : basic::options::OptionKeys::canonical_sampling::sampling
no_ecalc : basic::options::OptionKeys::patterson
no_edens_in_minimizer : basic::options::OptionKeys::edensity
no_filters : basic::options::OptionKeys::docking
no_frags : basic::options::OptionKeys::AnchoredDesign
no_global_frame : basic::options::OptionKeys::cm::hybridize
no_hb_bb : basic::options::OptionKeys::mh::filter
no_hb_env_dependence : basic::options::OptionKeys::optE
no_hb_env_dependence_DNA : basic::options::OptionKeys::optE
no_his_DE_pairE : basic::options::OptionKeys::corrections::score
no_his_his_pairE : basic::options::OptionKeys::corrections::score
no_interpolate_Mpair : basic::options::OptionKeys::membrane
no_jd2_output : basic::options::OptionKeys::canonical_sampling::probabilities
no_jumps : basic::options::OptionKeys::remodel
no_linearize_bounded : basic::options::OptionKeys::constraints
no_lk_polar_desolvation : basic::options::OptionKeys::score
no_looprebuild : basic::options::OptionKeys::loops
no_minimize : basic::options::OptionKeys::fold_cst
no_neighborhood_design : basic::options::OptionKeys::ufv
no_nstruct_label : basic::options::OptionKeys::out
no_optH : basic::options::OptionKeys::packing
no_output : basic::options::OptionKeys::jd2
no_output_cen : basic::options::OptionKeys::out::file
no_packstat_calculation : basic::options::OptionKeys::enzdes
no_pick_fragments : basic::options::OptionKeys::templates
no_prepack_prot : basic::options::OptionKeys::pepspec
no_prof_info_in_silentout : basic::options::OptionKeys::run
no_randomize_loop : basic::options::OptionKeys::loops
no_recover_low_at_constraint_switch : basic::options::OptionKeys::fold_cst
no_rotamer_bump : basic::options::OptionKeys::motifs
no_sample_ss_jumps : basic::options::OptionKeys::jumps
no_scorefile : basic::options::OptionKeys::run
no_shear : basic::options::OptionKeys::jumps
no_smooth_etables : basic::options::OptionKeys::score
no_unconstrained_repack : basic::options::OptionKeys::enzdes
no_wobble : basic::options::OptionKeys::jumps
no_write_failures : basic::options::OptionKeys::abinitio
nodelay : basic::options::OptionKeys::run
nodisulf : basic::options::OptionKeys::mh::filter
noloops : basic::options::OptionKeys::mh::filter , basic::options::OptionKeys::mh::score
non_ideal_loop_closing : basic::options::OptionKeys::loops
nonideal : basic::options::OptionKeys::optimization
nonlocal : basic::options::OptionKeys::frags::nonlocal , basic::options::OptionKeys::nonlocal
nonlocal_pairs : basic::options::OptionKeys::frags
nonpivot_torsion_sampling : basic::options::OptionKeys::loops
nooutput : basic::options::OptionKeys::out
nopack : basic::options::OptionKeys::dna::design
nopdb : basic::options::OptionKeys::dna::design
norepack1 : basic::options::OptionKeys::docking
norepack2 : basic::options::OptionKeys::docking
normal_cycles : basic::options::OptionKeys::membrane
normal_delta_angle : basic::options::OptionKeys::membrane
normal_mag : basic::options::OptionKeys::membrane
normal_max_angle : basic::options::OptionKeys::membrane
normal_search : basic::options::OptionKeys::membrane
normal_start_angle : basic::options::OptionKeys::membrane
normalization_id : basic::options::OptionKeys::PCS , basic::options::OptionKeys::PCSTS1 , basic::options::OptionKeys::PCSTS2 , basic::options::OptionKeys::PCSTS3 , basic::options::OptionKeys::PCSTS4
normalize : basic::options::OptionKeys::ProQ
normalize_decoy_score_spread : basic::options::OptionKeys::optE
normalize_mixture_func : basic::options::OptionKeys::constraints
normalize_score_ncontact : basic::options::OptionKeys::mh
noshmem : basic::options::OptionKeys::boinc
not_restype : basic::options::OptionKeys::mh::filter
not_restype_one : basic::options::OptionKeys::mh::filter
nproc : basic::options::OptionKeys::run
nr_large_copies : basic::options::OptionKeys::frags , basic::options::OptionKeys::templates
nr_scored_fragments : basic::options::OptionKeys::fast_loops
nr_scored_sampling_passes : basic::options::OptionKeys::fast_loops
nr_small_copies : basic::options::OptionKeys::templates
nrbmoves : basic::options::OptionKeys::RBSegmentRelax
nrboutercycles : basic::options::OptionKeys::RBSegmentRelax
nres : basic::options::OptionKeys::threadsc
nres_mono : basic::options::OptionKeys::smhybrid
nshells : basic::options::OptionKeys::patterson
nstep_water : basic::options::OptionKeys::dna::specificity
nstruct : basic::options::OptionKeys::out
nstruct_centroid : basic::options::OptionKeys::stepwise::protein
nterm_seq : basic::options::OptionKeys::assembly
Ntermini : basic::options::OptionKeys::in
ntrials : basic::options::OptionKeys::canonical_sampling::sampling , basic::options::OptionKeys::jd2
num_clusters : basic::options::OptionKeys::cmiles::kcluster
num_desired_loops : basic::options::OptionKeys::loops
num_frag_moves : basic::options::OptionKeys::remodel
num_fragments : basic::options::OptionKeys::cm::sanitize
num_iterations : basic::options::OptionKeys::casp
num_packs : basic::options::OptionKeys::ms
num_partitions : basic::options::OptionKeys::lh
num_pose_minimize : basic::options::OptionKeys::stepwise
num_random_samples : basic::options::OptionKeys::stepwise
num_repacks : basic::options::OptionKeys::motifs
num_subs_building_block : basic::options::OptionKeys::matdes
num_subs_total : basic::options::OptionKeys::matdes
num_traj : basic::options::OptionKeys::els
num_trajectory : basic::options::OptionKeys::remodel
number_3mer_frags : basic::options::OptionKeys::abinitio
number_9mer_frags : basic::options::OptionKeys::abinitio
number_of_swarm_cycles : basic::options::OptionKeys::optE
number_of_swarm_particles : basic::options::OptionKeys::optE
numbering_scheme : basic::options::OptionKeys::antibody
numresults : basic::options::OptionKeys::ms
NV_lbound : basic::options::OptionKeys::score
NV_table : basic::options::OptionKeys::score
NV_ubound : basic::options::OptionKeys::score