- t -

• t : basic::options::OptionKeys::in::file
• table : utility::options::OptionKeys::options::table
• taboo_in_fa : basic::options::OptionKeys::loops
• taboo_sampling : basic::options::OptionKeys::loops
• tag : basic::options::OptionKeys::matdes , basic::options::OptionKeys::resample , basic::options::OptionKeys::rot_anl
• tag2string : basic
• tagfile : basic::options::OptionKeys::in::file
• taglist : basic::options::OptionKeys::willmatch
• tags : basic::options::OptionKeys::in::file
• tags1 : basic::options::OptionKeys::stepwise
• tags2 : basic::options::OptionKeys::stepwise
• tail_mode : basic::options::OptionKeys::krassk
• tail_mode_name : basic::options::OptionKeys::krassk
• tail_output_file_name : basic::options::OptionKeys::krassk
• talos_cs : basic::options::OptionKeys::in::file
• talos_phi_psi : basic::options::OptionKeys::in::file
• target : basic::options::OptionKeys::hotspot
• target_aa : basic::options::OptionKeys::motifs
• target_dist : basic::options::OptionKeys::hotspot
• target_dna_defs : basic::options::OptionKeys::motifs
• target_res : basic::options::OptionKeys::hotspot
• target_residues : basic::options::OptionKeys::in
• targetdir : basic::options::OptionKeys::evolution
• temp_final : basic::options::OptionKeys::MonteCarlo
• temp_initial : basic::options::OptionKeys::MonteCarlo
• temperature : basic::options::OptionKeys::abinitio , basic::options::OptionKeys::ddg , basic::options::OptionKeys::docking , basic::options::OptionKeys::remodel::RemodelLoopMover , basic::options::OptionKeys::rigid , basic::options::OptionKeys::smhybrid , basic::options::OptionKeys::stepwise::monte_carlo
• template_ids : basic::options::OptionKeys::cm
• template_list : basic::options::OptionKeys::cm::hybridize
• template_pdb : basic::options::OptionKeys::in::file
• template_scores : basic::options::OptionKeys::cluster
• template_silent : basic::options::OptionKeys::in::file
• templates : basic::options::OptionKeys::cm::hybridize , basic::options::OptionKeys::templates
• tensor_weight : basic::options::OptionKeys::rdc
• term_max_angle : basic::options::OptionKeys::sicdock
• term_min_expose : basic::options::OptionKeys::sicdock
• terminal_res : basic::options::OptionKeys::stepwise::rna
• test_cycles : basic::options::OptionKeys::run
• test_encapsulation : basic::options::OptionKeys::stepwise
• testing : basic::options::OptionKeys::AnchoredDesign::testing
• tether_jump : basic::options::OptionKeys::stepwise::rna
• tether_ligand : basic::options::OptionKeys::docking::ligand
• text : utility::options::OptionKeys::options::table
• tf : basic::options::OptionKeys::dna::specificity
• thickness : basic::options::OptionKeys::membrane
• thinout_factor : basic::options::OptionKeys::cluster
• thorough : basic::options::OptionKeys::relax
• thread_unaligned : basic::options::OptionKeys::james
• threads : basic::options::OptionKeys::gpu , basic::options::OptionKeys::packstat
• threadsc : basic::options::OptionKeys::threadsc
• threshold : basic::options::OptionKeys::hotspot
• timer : basic::options::OptionKeys::loops , basic::options::OptionKeys::run
• top_graft_designs : basic::options::OptionKeys::antibody::design
• topN : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal
• topology_file : basic::options::OptionKeys::jumps
• topology_rank_cutoff : basic::options::OptionKeys::templates
• torsion_bin_probs : basic::options::OptionKeys::in::file
• torsion_thresholds : basic::options::OptionKeys::james
• torsionsMCM : basic::options::OptionKeys::flexPepDocking
• total_clock : basic
• total_weight : basic::options::OptionKeys::rdc
• TR : basic::database::schema_generator , basic::database , basic::datacache
• tr : basic::datacache
• TR : basic::message_listening , basic::options , basic::resource_manager::locator , basic::resource_manager
• TR_hh : basic::datacache
• traj_per_master : basic::options::OptionKeys::els
• trajectory : basic::options::OptionKeys::run
• trans_mag_smooth : basic::options::OptionKeys::fold_and_dock
• trans_magnitude : basic::options::OptionKeys::enzdes
• transition_threshold : basic::options::OptionKeys::canonical_sampling::sampling
• translate_by : basic::options::OptionKeys::ddg
• translation : basic::options::OptionKeys::rigid
• treat_residues_in_these_chains_as_separate_chemical_entities : basic::options::OptionKeys::in::file
• trg_anchor : basic::options::OptionKeys::threadsc
• trg_chain : basic::options::OptionKeys::threadsc
• trg_first_resid : basic::options::OptionKeys::threadsc
• trim_proportion : basic::options::OptionKeys::wum
• turn_conservation : basic::options::OptionKeys::antibody::design
• tweak_sxfn : basic::options::OptionKeys::docking::ligand
• two : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• two_body : basic::options::OptionKeys::rotamerdump
• two_chain_tree : basic::options::OptionKeys::remodel
• two_ubiquitins : basic::options::OptionKeys::chemically_conjugated_docking
• type : basic::options::OptionKeys::frags::contacts