- w -

• watchdog : basic::options::OptionKeys::boinc
• watchdog_time : basic::options::OptionKeys::boinc
• water : basic::options::OptionKeys::holes
• water_score_cutoff : basic::options::OptionKeys::motifs
• Wdna_bp : basic::options::OptionKeys::dna::specificity
• Wdna_bs : basic::options::OptionKeys::dna::specificity
• weight : basic::options::OptionKeys::patterson
• weight_file : basic::options::OptionKeys::casp , basic::options::OptionKeys::ddg
• weight_silent_scores : basic::options::OptionKeys::out::file
• weighted_density : basic::options::OptionKeys::hotspot
• weights : basic::options::OptionKeys::optE::rescore , basic::options::OptionKeys::optE , basic::options::OptionKeys::qsar , basic::options::OptionKeys::rdc , basic::options::OptionKeys::relax::centroid , basic::options::OptionKeys::score
• weights_tag : basic::options::OptionKeys::dna::specificity
• weights_tag_list : basic::options::OptionKeys::dna::specificity
• wExtern : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal
• Wfa_elec : basic::options::OptionKeys::dna::specificity
• whole_structure_allatom_wt : basic::options::OptionKeys::edensity
• whole_structure_ca_wt : basic::options::OptionKeys::edensity
• wide_nblist_extension : basic::options::OptionKeys::run
• Wiki : utility::options::OptionKeys::options::table
• willmatch : basic::options::OptionKeys::willmatch
• window_accept_ratio : basic::options::OptionKeys::fast_loops
• window_size : basic::options::OptionKeys::evaluation
• wobblemoves : basic::options::OptionKeys::relax
• working_res : basic::options::OptionKeys::stepwise
• wrap_dof_optimization : basic::options::OptionKeys::optE
• write_all_fa_structs : basic::options::OptionKeys::lh
• write_ca_coordinates : basic::options::OptionKeys::frags
• write_centroid_structs : basic::options::OptionKeys::lh
• write_extra : basic::options::OptionKeys::PCS , basic::options::OptionKeys::PCSTS1 , basic::options::OptionKeys::PCSTS2 , basic::options::OptionKeys::PCSTS3 , basic::options::OptionKeys::PCSTS4
• write_failures : basic::options::OptionKeys::run
• write_pdb_link_records : basic::options::OptionKeys::out::file
• write_rama_tables : basic::options::OptionKeys::frags
• write_reduced_matchset : basic::options::OptionKeys::crossmatch , basic::options::OptionKeys::willmatch
• write_scores : basic::options::OptionKeys::frags
• write_sequence_only : basic::options::OptionKeys::frags
• wt : basic::options::OptionKeys::casp , basic::options::OptionKeys::ddg
• wt_only : basic::options::OptionKeys::ddg
• wTopol : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal
• wum : basic::options::OptionKeys::wum