commit ce02443d455994def668b63455fd7977e63f26b1
Merge: e1ea120 37bb907
Date:   Sat Apr 9 10:17:58 2016 -0700

    Merge pull request #1257 from RosettaCommons/tlinsky/store_residue_subset
    
    Add StoreResidueSubset mover/StoredResidueSubset res selector
    
    Store_residue_subset is a new integration test

commit e1ea12022b382427ed6829878e10c45143e25317
Merge: 4e978cd ce772f0
Date:   Sat Apr 9 10:16:59 2016 -0700

    Merge pull request #1238 from RosettaCommons/tlinsky/tomponents
    
    updates to denovo_design classes for smoother centroid/fa switching

commit 4e978cd11960c8ab021227bf8582aeeb89310d71
Merge: 5334ab0 3bb5c77
Date:   Thu Apr 7 08:55:37 2016 -0700

    Merge pull request #1251 from RosettaCommons/tlinsky/add_csts_to_current_conformation_mover
    
    Fix bug in setting up TaskSelector in AddConstraintsToCurrentConformationMover
    Integration test change expected in task_selector since the input changed slightly.

commit 5334ab0245df0b9ef6003fed79102fa2448ea23d
Merge: af326fd dcfe97f
Date:   Thu Apr 7 09:52:35 2016 -0500

    Merge pull request #1255 from RosettaCommons/roccomoretti/option_spellcheck
    
    Add "spell check" for options.
    
    Add diagnostic output to suggest possible alternatives when a commandline option is not recognized due to:
    
    *    Wrong namespace (-out:file:pdb vs. -out:pdb)
    *    Wrong underscores (-out:file:scoreonly vs. -out:file:score_only)
    *    Wrong case (-flip_hnq vs. -flip_HNQ)
    *    Simple typos (-in:file:tagsfile vs. -in:file:tagfile; -out:perfex vs. -out:prefix)
    
    (Note the typo detection is rather basic, and prone to over-suggesting - don't expect miracles.)
    
    This is separate from (and subordinate to) the existing detection of ambiguous options.
    
    This code should only trigger when Rosetta would have exited with an unrecognized option.
    If you accidentally use the wrong option, it's not going to help.

commit af326fdb5ab9e7100e5675a90411d0eb1e05fda3
Merge: 836cac7 7e70123
Date:   Thu Apr 7 01:22:32 2016 -0700

    Merge pull request #1258 from RosettaCommons/tlinsky/add_actccm_integration_test
    
    Add integration test for AddConstraintsToCurrentConformationMover

commit 836cac7500dcd4123d3c29c669e41afa53d1950a
Date:   Wed Apr 6 10:55:46 2016 -0700

    Adding Intel libraries needed for linking icc build to basic.settings settings for icc.  Merging without testing, since this shouldn't affect any test-server build.

commit 815717d78b1c7c1f4060789d2e6c2e28207ca175
Merge: 5ea15ba f2dc187
Date:   Wed Apr 6 08:13:13 2016 -0400

    Merge pull request #1254 from RosettaCommons/JWLabonte/sugars/branching
    
    Post-ChemicalXRW: Fix bug introduced during purging of LINK records
    
    This merge fixes a bug introduced during the ChemicalXRW (by Andy :p) that broke the way branches were assigned from .pdb files involving sugars and adds a unit test so that this does not happen again. :)
    
    This also adds another sugar .params file, which will permit core fucosylated N-glycans in PDB format to be loaded. (Before, they could only be loaded with Rosetta-format HETNAM records, and I failed to notice that.)
    
    All unit tests pass. Minor integration test changes do to changes in input files and help output.

commit 5ea15ba1306402147bd55009952565a3ca62c10a
Merge: 64d6b6f a7c71ee
Date:   Tue Apr 5 15:50:10 2016 -0700

    Merge pull request #1250 from RosettaCommons/tlinsky/revert_actccm
    
    Revert changes to AddConstraintsToCurrentConformationMover

commit 64d6b6fe1339aa77b7fd6084987153a53ef2cc37
Merge: b85c5af 5988842
Date:   Tue Apr 5 14:49:51 2016 -0700

    Merge pull request #1247 from RosettaCommons/tlinsky/constraint_io
    
    Make Constraint's operator<< take a Constraint const &

commit b85c5af84191c7e9b1622ceab35c2b71efd566fd
Merge: 6a09bae a59ab16
Date:   Sun Apr 3 22:15:04 2016 -0600

    Merge pull request #1249 from RosettaCommons/sergey/binder
    
    Minor refactoring to fix some PyRosetta parsing errors

commit 6a09bae24bc7475a325426354639795482593864
Merge: 8176854 4dd9a2b
Date:   Sun Apr 3 10:51:18 2016 -0700

    Merge pull request #1246 from RosettaCommons/hssnzdh2/prependRepeat
    
    Add repeat feature to "prepend" in PeptideStubMover