basic::options::OptionKeys::pepspec Namespace Reference

Variables
BooleanOptionKey const	pepspec
StringOptionKey const	soft_wts
StringOptionKey const	cen_wts
BooleanOptionKey const	binding_score
BooleanOptionKey const	no_cen
BooleanOptionKey const	no_cen_rottrials
BooleanOptionKey const	run_sequential
IntegerOptionKey const	pep_anchor
StringOptionKey const	pep_chain
IntegerOptionKey const	n_peptides
IntegerOptionKey const	n_build_loop
IntegerOptionKey const	n_cgrelax_loop
IntegerOptionKey const	n_dock_loop
RealOptionKey const	interface_cutoff
BooleanOptionKey const	use_input_bb
BooleanOptionKey const	remove_input_bb
StringOptionKey const	homol_csts
RealOptionKey const	p_homol_csts
BooleanOptionKey const	gen_pep_bb_sequential
StringOptionKey const	input_seq
StringOptionKey const	ss_type
BooleanOptionKey const	upweight_interface
BooleanOptionKey const	calc_sasa
BooleanOptionKey const	diversify_pep_seqs
IntegerOptionKey const	diversify_lvl
BooleanOptionKey const	dump_cg_bb
BooleanOptionKey const	save_low_pdbs
BooleanOptionKey const	save_all_pdbs
BooleanOptionKey const	no_design
StringOptionKey const	pdb_list
StringOptionKey const	ref_pdb_list
BooleanOptionKey const	add_buffer_res
StringOptionKey const	cg_res_type
IntegerOptionKey const	native_pep_anchor
StringOptionKey const	native_pep_chain
BooleanOptionKey const	native_align
BooleanOptionKey const	rmsd_analysis
StringOptionKey const	anchor_type
BooleanOptionKey const	no_prepack_prot
BooleanOptionKey const	prep_use_ref_rotamers
IntegerOptionKey const	n_prepend
IntegerOptionKey const	n_append
RealOptionKey const	clash_cutoff
RealOptionKey const	n_anchor_dock_std_devs
RealOptionKey const	prep_trans_std_dev
RealOptionKey const	prep_rot_std_dev
BooleanOptionKey const	seq_align
StringOptionKey const	prep_align_prot_to

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::pepspec::add_buffer_res

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::anchor_type

Referenced by add_rosetta_options_11(), and run_pep_prep().

BooleanOptionKey const basic::options::OptionKeys::pepspec::binding_score

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::calc_sasa

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::cen_wts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::cg_res_type

Referenced by add_rosetta_options_11(), gen_pep_bb_sequential(), and initialize_peptide().

RealOptionKey const basic::options::OptionKeys::pepspec::clash_cutoff

Referenced by add_rosetta_options_11(), and gen_pep_bb_sequential().

IntegerOptionKey const basic::options::OptionKeys::pepspec::diversify_lvl

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::diversify_pep_seqs

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::dump_cg_bb

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::gen_pep_bb_sequential

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::homol_csts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::input_seq

Referenced by add_rosetta_options_11(), gen_pep_bb_sequential(), and RunPepSpec().

RealOptionKey const basic::options::OptionKeys::pepspec::interface_cutoff

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::n_anchor_dock_std_devs

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_append

Referenced by add_rosetta_options_11(), gen_pep_bb_sequential(), run_pep_prep(), and RunPepSpec().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_build_loop

Referenced by add_rosetta_options_11(), and gen_pep_bb_sequential().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_cgrelax_loop

Referenced by add_rosetta_options_11(), and RunPepSpec().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_dock_loop

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_peptides

Referenced by add_rosetta_options_11(), run_pep_prep(), and RunPepSpec().

IntegerOptionKey const basic::options::OptionKeys::pepspec::n_prepend

Referenced by add_rosetta_options_11(), gen_pep_bb_sequential(), run_pep_prep(), and RunPepSpec().

BooleanOptionKey const basic::options::OptionKeys::pepspec::native_align

Referenced by add_rosetta_options_11().

IntegerOptionKey const basic::options::OptionKeys::pepspec::native_pep_anchor

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::native_pep_chain

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_cen_rottrials

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_design

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::no_prepack_prot

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::p_homol_csts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::pdb_list

Referenced by add_rosetta_options_11(), and rhiju_pdbstats().

IntegerOptionKey const basic::options::OptionKeys::pepspec::pep_anchor

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::pep_chain

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::pepspec

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::prep_align_prot_to

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_rot_std_dev

Referenced by add_rosetta_options_11().

RealOptionKey const basic::options::OptionKeys::pepspec::prep_trans_std_dev

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::prep_use_ref_rotamers

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::ref_pdb_list

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::remove_input_bb

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::rmsd_analysis

Referenced by add_rosetta_options_11(), and pep_rmsd_analysis().

BooleanOptionKey const basic::options::OptionKeys::pepspec::run_sequential

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::save_all_pdbs

Referenced by add_rosetta_options_11(), and RunPepSpec().

BooleanOptionKey const basic::options::OptionKeys::pepspec::save_low_pdbs

Referenced by add_rosetta_options_11(), and RunPepSpec().

BooleanOptionKey const basic::options::OptionKeys::pepspec::seq_align

Referenced by add_rosetta_options_11(), and run_pep_prep().

StringOptionKey const basic::options::OptionKeys::pepspec::soft_wts

Referenced by add_rosetta_options_11().

StringOptionKey const basic::options::OptionKeys::pepspec::ss_type

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::upweight_interface

Referenced by add_rosetta_options_11().

BooleanOptionKey const basic::options::OptionKeys::pepspec::use_input_bb

Referenced by add_rosetta_options_11().