pyrosetta.distributed.cluster.tools Namespace Reference

Functions
def	_print_conda_warnings
def	get_protocols
def	get_instance_kwargs
def	recreate_environment
def	reserve_scores
def	reproduce
def	produce

Variables
string	__author__ = "Jason C. Klima"
string	__email__ = "klima.jason@gmail.com"
tuple	P = TypeVar("P", bound=Callable[..., Any])

Function Documentation

def pyrosetta.distributed.cluster.tools._print_conda_warnings (   None )

private

Print warning message if Anaconda or Miniconda are not installed and we are
not in an active conda environment.

References pyrosetta.distributed.cluster.tools.get_protocols(), pyrosetta.distributed.cluster.converter_tasks.get_yml(), and fmt.print().

def pyrosetta.distributed.cluster.tools.get_instance_kwargs

(

input_file

)

References basic::database.open(), pyrosetta.distributed.cluster.converter_tasks.parse_decoy_name(), pyrosetta.distributed.cluster.converter_tasks.parse_input_file_to_instance_kwargs(), pyrosetta.distributed.cluster.converter_tasks.parse_scorefile(), and pyrosetta.distributed.cluster.tools.recreate_environment().

Referenced by pyrosetta.distributed.cluster.tools.get_protocols(), pyrosetta.distributed.cluster.tools.recreate_environment(), and pyrosetta.distributed.cluster.tools.reproduce().

def pyrosetta.distributed.cluster.tools.get_protocols

(

protocols

)

References pyrosetta.distributed.cluster.converters._parse_protocols(), pyrosetta.distributed.cluster.tools.get_instance_kwargs(), pyrosetta.distributed.cluster.converter_tasks.get_protocols_list_of_str(), ObjexxFCL.len(), and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.distributed.cluster.tools._print_conda_warnings(), and pyrosetta.distributed.cluster.tools.reproduce().

def pyrosetta.distributed.cluster.tools.produce

(

kwargs

)

Referenced by pyrosetta.tests.distributed.cluster.test_smoke.SmokeTest.test_smoke().

def pyrosetta.distributed.cluster.tools.recreate_environment

(

environment_name

)

References pyrosetta.distributed.cluster.tools.get_instance_kwargs(), and basic::database.open().

Referenced by pyrosetta.distributed.cluster.tools.get_instance_kwargs().

def pyrosetta.distributed.cluster.tools.reproduce

(

input_file

)

References pyrosetta.distributed.cluster.tools.get_instance_kwargs(), pyrosetta.distributed.cluster.tools.get_protocols(), pyrosetta.distributed.cluster.converter_tasks.parse_client(), pyrosetta.distributed.cluster.converter_tasks.parse_input_packed_pose(), and pyrosetta.distributed.cluster.converter_tasks.parse_instance_kwargs().

Referenced by pyrosetta.distributed.cluster.tools.reserve_scores(), and pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibilityMulti.test_reproducibility_from_reproduce().

def pyrosetta.distributed.cluster.tools.reserve_scores

(

func

)

References pyrosetta.distributed.cluster.tools.reproduce(), and pyrosetta.distributed.cluster.converter_tasks.reserve_scores_in_results().

Variable Documentation

string pyrosetta.distributed.cluster.tools.__author__ = "Jason C. Klima"

string pyrosetta.distributed.cluster.tools.__email__ = "klima.jason@gmail.com"

tuple pyrosetta.distributed.cluster.tools.P = TypeVar("P", bound=Callable[..., Any])