test.T500_Packing Namespace Reference

Functions
def	elim_everything_except_G

Variables
tuple	pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")
tuple	scorefxn = get_fa_scorefxn()
tuple	task_pack = standard_packer_task(pose)
tuple	pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )
tuple	rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)
tuple	task_design = core.pack.task.TaskFactory.create_packer_task(pose)
tuple	tf = standard_task_factory()
tuple	pr = core.pack.task.operation.PreventRepacking()
tuple	elimer = core.pack.rotamer_set.PyRotamerEliminator()
tuple	elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()
tuple	pr2 = protocols.minimization_packing.PackRotamersMover()
tuple	op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_std_allocator_std_shared_ptr_core_pack_task_operation_TaskOperation_t()
tuple	pose2 = pose_from_sequence( "FRED" )

Function Documentation

def test.T500_Packing.elim_everything_except_G	(		pose,
			sfxn,
			task,
			graph,
			rotamer_sets
	)

References basic::options::OptionKeys::relax::range.range.

Variable Documentation

tuple test.T500_Packing.elimer = core.pack.rotamer_set.PyRotamerEliminator()

tuple test.T500_Packing.elimerTO = core.pack.rotamer_set.PyRotamerEliminatorTaskOperation()

tuple test.T500_Packing.op_list = pyrosetta.rosetta.std.list_std_shared_ptr_core_pack_task_operation_TaskOperation_std_allocator_std_shared_ptr_core_pack_task_operation_TaskOperation_t()

tuple test.T500_Packing.pack = protocols.minimization_packing.PackRotamersMover( scorefxn, task_pack )

tuple test.T500_Packing.pose = core.import_pose.pose_from_file("../test/data/test_in.pdb")

tuple test.T500_Packing.pose2 = pose_from_sequence( "FRED" )

tuple test.T500_Packing.pr = core.pack.task.operation.PreventRepacking()

Referenced by main(), output_packstat(), output_packstat_pdb(), and basic::TracerImpl::TracerProxyImpl.t_flush().

tuple test.T500_Packing.pr2 = protocols.minimization_packing.PackRotamersMover()

tuple test.T500_Packing.rotamer_trials = protocols.minimization_packing.RotamerTrialsMover(scorefxn, task_pack)

Referenced by main(), and rna_design_test().

tuple test.T500_Packing.scorefxn = get_fa_scorefxn()

tuple test.T500_Packing.task_design = core.pack.task.TaskFactory.create_packer_task(pose)

tuple test.T500_Packing.task_pack = standard_packer_task(pose)

tuple test.T500_Packing.tf = standard_task_factory()