auto-DRRAFTER_setup Namespace Reference

Functions
def	get_num_neighbors
def	get_neighbors
def	get_distance
def	get_angle_btwn
def	get_density_btwn_points
def	auto_setup_helices

Variables
float	END_NODE_ANGLE_CUTOFF = 0.87
	Run variables. More...
string	FLAGS_TEMPLATE
tuple	parser = argparse.ArgumentParser( description='Auto setup helices for DRRAFTER-RNA' )
tuple	args = parser.parse_args()

Function Documentation

def auto-DRRAFTER_setup.auto_setup_helices

(

args

)

References DRRAFTER_util.better_reorder_pdb(), clean_pdb_keep_ligand.count, basic::options::OptionKeys::stepwise.enumerate, utility::options::OptionKeys::options.exit, DRRAFTER_util.extract_lowscore_decoys(), pyrosetta.tests.distributed.test_dask.format, get_angle_btwn(), get_density_btwn_points(), get_distance(), get_neighbors(), get_num_neighbors(), DRRAFTER_util.graph_from_ss(), ObjexxFCL.len(), DRRAFTER_util.make_tag_with_dashes(), basic::database.open(), fmt.print(), basic::options::OptionKeys::relax::range.range, binder.replace(), DRRAFTER_util.residue_graph_from_ss(), and DRRAFTER_util.rna_helix().

def auto-DRRAFTER_setup.get_angle_btwn	(		v1,
			v2
	)

Referenced by auto_setup_helices().

def auto-DRRAFTER_setup.get_density_btwn_points	(		dens_map,
			point1,
			point2,
			npoints
	)

References basic::options::OptionKeys::relax::range.range.

Referenced by auto_setup_helices().

def auto-DRRAFTER_setup.get_distance	(		p1,
			p2
	)

Referenced by auto_setup_helices().

def auto-DRRAFTER_setup.get_neighbors	(		tree,
			node
	)

Referenced by auto_setup_helices().

def auto-DRRAFTER_setup.get_num_neighbors	(		tree,
			node
	)

Referenced by auto_setup_helices().

Variable Documentation

tuple auto-DRRAFTER_setup.args = parser.parse_args()

Referenced by utility::graph::LowMemGraph< _Node, _Edge >.add_edge(), binder.bind_constructor(), binder.bind_function(), binder.bind_member_functions_for_call_back(), fmt::internal::FormatterBase.FormatterBase(), fmt::BasicFormatter< CharType, ArgFormatter >.get_arg(), utility::tag.handle_xml_error(), utility::tag.handle_xml_warning(), utility::graph::LowMemGraph< _Node, _Edge >.internal_create_new_edge(), numeric::expression_parser::ExpressionCreator.visit(), and fmt::BasicWriter< Char >.write().

float auto-DRRAFTER_setup.END_NODE_ANGLE_CUTOFF = 0.87

Run variables.

string auto-DRRAFTER_setup.FLAGS_TEMPLATE

tuple auto-DRRAFTER_setup.parser = argparse.ArgumentParser( description='Auto setup helices for DRRAFTER-RNA' )