test.G200_Module_Region Namespace Reference

Variables
string	rel = "../"
tuple	p = pose_from_file(os.path.dirname(os.path.abspath(__file__))+"/data/gui/2j88.pdb")
tuple	reg = Region("L", 24, 42)
tuple	mm = reg.get_movemap(p)
tuple	loop = reg.get_loop()
tuple	regs = Regions()
tuple	region2 = Region("H", 24, 42)
tuple	tf = regs.get_basic_tf(p)
tuple	task = tf.create_task_and_apply_taskoperations(p)
tuple	loops = regs.get_Loops_from_regions()

Variable Documentation

tuple test.G200_Module_Region.loop = reg.get_loop()

Referenced by numeric::kinematic_closure::radians.bridge_objects(), numeric::kinematic_closure.bridgeObjects(), and main().

tuple test.G200_Module_Region.loops = regs.get_Loops_from_regions()

tuple test.G200_Module_Region.mm = reg.get_movemap(p)

tuple test.G200_Module_Region.p = pose_from_file(os.path.dirname(os.path.abspath(__file__))+"/data/gui/2j88.pdb")

tuple test.G200_Module_Region.reg = Region("L", 24, 42)

Referenced by utility::factory::Factory< typename >.create(), and utility::factory::Factory< typename >.has().

tuple test.G200_Module_Region.region2 = Region("H", 24, 42)

Referenced by processRegions().

tuple test.G200_Module_Region.regs = Regions()

string test.G200_Module_Region.rel = "../"

tuple test.G200_Module_Region.task = tf.create_task_and_apply_taskoperations(p)

Referenced by LigandRepackMinimizeProtocol.apply(), MPDomainAssembly.apply(), DockGlycansProtocol.apply(), UBQ_E2Mover.apply(), supercharge.design_supercharge(), supercharge.design_supercharge_AvNAPSA(), supercharge.energy_comparison(), DockGlycansProtocol.init(), UBQ_GTPase_disulfide_Mover.init_on_new_input(), UBQ_E2Mover.init_on_new_input(), main(), packmin_unbound_pep(), supercharge.prepack_input_structure(), InteractionGraphPerformanceBenchmark.prepare_rotamer_sets(), InteractionGraphPerformanceBenchmark.redesign_20(), rna_design_test(), ConsensusFragmentMover.run(), SolutionRescoreMover.run(), run_pep_prep(), zinc1_homodimer_design.setup_taskfactory(), zinc2_homodimer_design.setup_taskfactory_scorefunction_movers(), and PhProtocol.titrate_pH().

tuple test.G200_Module_Region.tf = regs.get_basic_tf(p)

Referenced by calc_scores(), DockGlycansProtocol.init(), numeric::linear_algebra.rgg(), and ConsensusFragmentMover.run().