demo.D020_Pose_scoring Namespace Reference

Functions
def	pose_scoring

Variables
tuple	parser = optparse.OptionParser()
	INTERPRETING RESULTS. More...
string	default = '../test/data/test_in.pdb'
string	help = 'the PDB file containing the loop to remodel'
	pdb_filename = options.pdb_filename
tuple	pose = Pose()
	residues = options.residues

Function Documentation

def demo.D020_Pose_scoring.pose_scoring	(		pose,
			display_residues = []
	)

Extracts and displays various score evaluations on the input  <pose>
and its  <display_residues>  including:
total score
score term evaluations
per-residue score
radius of gyration (approximate)

References pyrosetta.create_score_function, ObjexxFCL.len(), ObjexxFCL.ljust(), name, fmt.print(), basic::options::OptionKeys::run::PyMOLMover.PyMOLMover, basic::options::OptionKeys::relax::range.range, basic::options::OptionKeys::DisulfideInsertion.scorefxn, and ObjexxFCL.strip().

Variable Documentation

string demo.D020_Pose_scoring.default = '../test/data/test_in.pdb'

string demo.D020_Pose_scoring.help = 'the PDB file containing the loop to remodel'

tuple demo.D020_Pose_scoring.parser = optparse.OptionParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

demo.D020_Pose_scoring.pdb_filename = options.pdb_filename

tuple demo.D020_Pose_scoring.pose = Pose()

list demo.D020_Pose_scoring.residues = options.residues

Referenced by add_rosetta_options_15(), ExemplarMover.apply(), main(), and mutate_and_score_RNP().