basic::options::OptionKeys::cluster::energy_based_clustering Namespace Reference

Variables
BooleanOptionKey const	energy_based_clustering
BooleanOptionKey const	prerelax
IntegerOptionKey const	relax_rounds
StringOptionKey const	cluster_by
BooleanOptionKey const	use_CB
RealOptionKey const	cluster_radius
IntegerVectorOptionKey const	residues_to_ignore
IntegerVectorOptionKey const	chains_to_ignore
IntegerOptionKey const	limit_structures_per_cluster
IntegerOptionKey const	limit_clusters
BooleanOptionKey const	cyclic
IntegerOptionKey const	cyclic_symmetry
BooleanOptionKey const	cyclic_symmetry_mirroring
RealOptionKey const	cyclic_symmetry_threshold
BooleanOptionKey const	cluster_cyclic_permutations
IntegerOptionKey const	cyclic_permutation_offset
BooleanOptionKey const	perform_ABOXYZ_bin_analysis
BooleanOptionKey const	mutate_to_ala
IntegerVectorOptionKey const	disulfide_positions
BooleanOptionKey const	homooligomer_swap
BooleanOptionKey const	silent_output
FileVectorOptionKey const	cst_file
StringVectorOptionKey const	extra_rms_atoms
BooleanOptionKey const	rebuild_all_in_dihedral_mode

Variable Documentation

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::chains_to_ignore

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_by

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_cyclic_permutations

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cluster_radius

Referenced by add_rosetta_options_6(), cluster_outfile_test(), cluster_test(), main(), and make_fragments().

FileVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cst_file

Referenced by add_rosetta_options_6(), get_stepwise_score_function(), main(), print_pep_csts(), rebuild_test(), run(), and RunPepSpec().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic

Referenced by add_rosetta_options_6(), PeptoidDesignMover::apply(), and main().

IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_permutation_offset

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_mirroring

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::cyclic_symmetry_threshold

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::disulfide_positions

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::energy_based_clustering

Referenced by add_rosetta_options_6(), and main().

StringVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::extra_rms_atoms

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::homooligomer_swap

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_clusters

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::limit_structures_per_cluster

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::mutate_to_ala

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::perform_ABOXYZ_bin_analysis

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::prerelax

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::rebuild_all_in_dihedral_mode

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::relax_rounds

Referenced by add_rosetta_options_6().

IntegerVectorOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::residues_to_ignore

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::silent_output

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cluster::energy_based_clustering::use_CB

Referenced by add_rosetta_options_6().